CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g41050

Gene name PQ-loop repeat family protein / transmembrane family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At2g41050 818704 PQ-loop repeat family protein / transmembrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FMOP S.X. H.G.
0.40 50.8 At2g17800 816290 ARAC1 A member of ROP GTPase family. Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway. S.X. H.G.
0.40 50.8 At4g35950 829750 ARAC6 (ARABIDOPSIS RAC-LIKE 6) A member of ROP GTPases gene family-like. GTP binding protein Arac6. S.X. H.G.
0.17 10.2 At1g15490 838119 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFA S.X. H.G.
0.04 0.9 At5g02370 831740 kinesin motor protein-related F:microtubule motor activity, sequence-specific DNA binding, ATP binding;P:microtubule-based movement;C:chloroplast;MOPFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
222.9 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
68.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.4 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
50.8 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.8 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.3 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
36.3 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
35.9 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.7 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.1 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 6e-87 321 At4g20100 827756 PQ-loop repeat family protein / transmembrane family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;FMPO C.G. S.X.
0.02 6e-1 36 At1g09520 837478 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:chloroplast;POF C.G. S.X.
0.01 2e+0 34 At5g58850 836002 MYB119 (MYB DOMAIN PROTEIN 119) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB119). C.G. S.X.
0.01 2e+0 34 At5g45840 834624 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 2e+0 34 At5g07770 830670 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:unknown;C:chloroplast;MPOFBVA C.G. S.X.
0.01 2e+0 34 At5g07780 830671 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPOBFVA C.G. S.X.
0.01 2e+0 34 At5g07650 830658 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MOPFBA C.G. S.X.
0.02 2e+0 34 At5g26270 832696 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP C.G. S.X.
0.01 2e+0 34 At5g39550 833951 VIM3 (VARIANT IN METHYLATION 3) Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Glycine max GmaAffx.61066.1.S1_at CA782606 - - 3e-3 At5g05365 metal ion binding C.G. S.X.
0.04 5e-6 52 Hordeum vulgare Contig9506_at Contig9506 - - 1e-5 At2g41050 PQ-loop repeat family protein / transmembrane family protein C.G. S.X.
0.13 3e-13 77 Oryza sativa Os01g0266800 AK069474.1 - Cystinosin/ERS1p repeat containing protein 3e-13 At2g41050 PQ-loop repeat family protein / transmembrane family protein C.G. S.X.
0.30 7e-23 109 Populus trichocarpa PtpAffx.213189.1.S1_at pmrna25804 hypothetical protein - 4e-23 At2g41050 PQ-loop repeat family protein / transmembrane family protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.4501.3.S1_at CA737866 - - 8e-1 At2g41050 PQ-loop repeat family protein / transmembrane family protein C.G. S.X.
0.03 7e-1 34 Vitis vinifera 1614494_at CB970251 hypothetical protein LOC100251961 - 6e-2 At5g64160 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.13107.1.S1_at CD438929 - - 6e+0 At5g35375 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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