Gene omics information

Query gene ID At2g40770
Gene name ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At2g40770818674ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion bindingF:in 6 functions;P:unknown;C:unknown;MFBOPVAS.X.H.G.
0.6781.6At1g08060837322MOM (MORPHEUS MOLECULE)F:unknown;P:chromatin silencing;C:nucleus;MFOBPVAS.X.H.G.
0.6781.6At2g01440814672ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid bindingF:ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:DNA repair, DNA recombination;C:unknown;BOMFPAVS.X.H.G.
0.3643.6At4g15180827183SDG2 (SET DOMAIN-CONTAINING PROTEIN 2)F:unknown;P:unknown;C:unknown;MOPFBVS.X.H.G.
0.3643.6At4g18600827594WAVE5Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
242.2100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
132.399.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.499.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
27.599.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
23.999.6GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
22.699.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.699.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.399.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.199.6GSM176880AWP_Control_2GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
20.999.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-140At1g55760842025BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:unknown;MPOVFC.G.S.X.
0.016e-138At5g22035-C.G.S.X.
0.016e-138At3g45600823702TET3 (TETRASPANIN3)Member of TETRASPANIN familyC.G.S.X.
0.016e-138At1g20270838615oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFVC.G.S.X.
0.013e+036At5g24130832478unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMC.G.S.X.
0.003e+036At5g42950834307GYF domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.014e+036Glycine maxHgAffx.4596.1.S1_atCD748829--4e+0At1g13830beta-1,3-glucanase-relatedC.G.S.X.
0.013e-138Hordeum vulgareContig9122_atContig9122--7e-1At3g04990-C.G.S.X.
0.031e-348Oryza sativaOs07g0680500AK070164.1-Helicase, C-terminal domain containing protein2e-4At2g40770ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion bindingC.G.S.X.
0.225e-64248Populus trichocarpaPtpAffx.215597.1.S1_atpmrna29885chromatin remodeling complex subunit-3e-64At2g40770ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion bindingC.G.S.X.
0.017e-138Triticum aestivumTaAffx.80989.1.S1_atCA690480--8e-1At4g16930disease resistance protein (TIR-NBS-LRR class), putativeC.G.S.X.
0.012e-138Vitis vinifera1615764_atCD714721--1e+0At2g31100triacylglycerol lipaseC.G.S.X.
0.014e+034Zea maysZm.3995.1.S1_atAY107938.1COP9 signalosome complex subunit 5b-6e-10At1g22920CSN5A (COP9 SIGNALOSOME 5A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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