CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g40620

Gene name bZIP transcription factor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At2g40620 818657 bZIP transcription factor family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFB S.X. H.G.
0.80 89.8 At1g10740 837617 unknown protein F:unknown;P:glycerol biosynthetic process;C:endomembrane system;BOPFM S.X. H.G.
0.76 87.4 At1g06700 837180 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.73 85.5 At3g51770 824340 ETO1 (ETHYLENE OVERPRODUCER 1) Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS S.X. H.G.
0.70 83.5 At2g19880 816507 ceramide glucosyltransferase, putative F:ceramide glucosyltransferase activity;P:biological_process unknown;C:endomembrane system;MBPFAO S.X. H.G.
0.68 82.2 At1g05960 837106 binding F:binding;P:biological_process unknown;C:plasma membrane;MFPBO S.X. H.G.
0.67 81.6 At5g47620 834812 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA S.X. H.G.
0.65 79.6 At3g62660 825440 GATL7 (Galacturonosyltransferase-like 7) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.65 79.6 At5g61960 836317 AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices. S.X. H.G.
0.64 78.9 At1g54920 841930 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOPFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
81.6 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
80.6 99.9 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
76.3 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
73.0 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
68.6 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
68.3 99.9 E-MEXP-1138-raw-cel-1432772682
64.6 99.8 E-MEXP-1138-raw-cel-1432773354
64.3 99.8 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
63.6 99.8 E-MEXP-1138-raw-cel-1432772906
62.6 99.8 E-MEXP-1138-raw-cel-1432772714
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 9e-9 61 At1g06850 837197 AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBV C.G. S.X.
0.05 6e-4 46 At1g43700 840957 VIP1 (VIRE2-INTERACTING PROTEIN 1) Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half. C.G. S.X.
0.06 2e-3 44 At2g31370 817695 bZIP transcription factor (POSF21) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVA C.G. S.X.
0.01 9e-3 42 At1g20780 838668 SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1) Encodes a protein containing a U-box and an ARM domain. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 8e-4 46 Glycine max GmaAffx.76052.1.S1_at CA785545 bZIP transcription factor bZIP43 - 5e-22 At1g06850 AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig23383_at Contig23383 - - 7e-6 At1g06850 AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52) C.G. S.X.
0.07 1e-3 46 Oryza sativa Os03g0336200 AY466471.1 - BZIP transcription factor RF2b 3e-25 At1g06850 AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52) C.G. S.X.
0.18 4e-15 83 Populus trichocarpa Ptp.7832.1.S1_at DN499804 hypothetical protein - 1e-12 At1g06850 AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52) C.G. S.X.
0.04 2e-3 44 Triticum aestivum Ta.4604.1.S1_at CD937419 - - 2e-3 At2g40620 bZIP transcription factor family protein C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1616540_at CF414501 hypothetical protein LOC100244175 - 3e-14 At1g71865 unknown protein C.G. S.X.
0.02 9e-1 34 Zea mays Zm.18931.1.A1_at CO532474 transposon protein CACTA, En/Spm sub-class - 4e-2 At5g41400 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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