Gene omics information

Query gene ID At2g40260
Gene name myb family transcription factor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6478.9At2g40260818618myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOFS.X.H.G.
0.8693.1At1g78530844189protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.8391.4At2g38300818410DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFS.X.H.G.
0.8290.9At1g11340837676S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAS.X.H.G.
0.7586.9At3g51760824339unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7184.2At2g20875816621EPF1 (EPIDERMAL PATTERNING FACTOR 1)F:molecular_function unknown;P:stomatal complex patterning;C:unknown;PS.X.H.G.
0.7083.5At2g46070819215MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.S.X.H.G.
0.6781.6At3g24140822000FMA (FAMA)Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate and in controlling the transition from guard mother cell to guard cell.S.X.H.G.
0.6781.6At4g14480827095protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAS.X.H.G.
0.5469.5At2g24520816988AHA5 (Arabidopsis H(+)-ATPase 5)F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane;BMOFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
870.4100.0E-MEXP-1443-raw-cel-1581869515
448.7100.0E-MEXP-1443-raw-cel-1581869573
155.699.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
77.299.9GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
48.699.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
41.599.8GSM184476Lateral Root Cap root cells 2hr KCl control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
36.899.7GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
35.699.7GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination Study
34.699.7GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
34.399.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.061e-1481At2g38300818410DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFC.G.S.X.
0.022e-138At2g06020815156myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POC.G.S.X.
0.026e-136At5g03200831908zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVFC.G.S.X.
0.026e-136At5g02720831821unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.036e-136At2g229052745553Expressed proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e+034At5g35950833586jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.012e+034At5g13060831145ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1)Encodes a novel Armadillo BTB protein that intreacts with the pre-replication complex and several transcription factors. Overexpression results in decreased cell proliferation and loss of function results in increased cell proliferation suggesting a role in negative regulation of cellular proliferation.C.G.S.X.
0.012e+034At5g41040834106transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.029e-136Glycine maxGma.6494.2.A1_atBQ612578--2e-1At5g02720unknown proteinC.G.S.X.
0.083e-1065Hordeum vulgareContig16549_atContig16549--7e-13At2g38300DNA binding / transcription factorC.G.S.X.
0.082e-861Oryza sativaOs12g0105600AK107297.1-Myb, DNA-binding domain containing protein4e-15At2g38300DNA binding / transcription factorC.G.S.X.
0.141e-1585Populus trichocarpaPtpAffx.207775.1.S1_atpmrna15460hypothetical protein-3e-24At2g38300DNA binding / transcription factorC.G.S.X.
0.081e-552Triticum aestivumTaAffx.78909.1.S1_atBJ288732--4e-10At2g38300DNA binding / transcription factorC.G.S.X.
0.021e-240Vitis vinifera1606643_atCF201121.1--9e-8At5g51020CRL (CRUMPLED LEAF)C.G.S.X.
0.021e+034Zea maysZm.11240.1.A1_atBM340894--1e+0At3g5954060S ribosomal protein L38 (RPL38B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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