Gene omics information

Query gene ID At2g40140
Gene name CZF1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At2g40140818605CZF1F:transcription factor activity;P:defense response to fungus, response to cold, response to chitin, regulation of transcription;C:cellular_component unknown;MPOFBAVS.X.H.G.
0.4050.8At2g33580817923protein kinase family protein / peptidoglycan-binding LysM domain-containing proteinF:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVAS.X.H.G.
0.4050.8At3g49530824115anac062 (Arabidopsis NAC domain containing protein 62)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PS.X.H.G.
0.3338.1At5g24590832530--S.X.H.G.
0.2420.7At3g16720820924ATL2RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
63.599.8GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
63.499.8GSM184499Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
56.899.8GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutants
55.599.8GSM39197RRE1_Chitin3GSE2169rre1 and rre2 mutants
54.699.8GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
50.799.8GSM39211RRE2_Chitin1GSE2169rre1 and rre2 mutants
49.999.8GSM39198RRE1_Chitin4GSE2169rre1 and rre2 mutants
48.799.8GSM39213RRE2_Chitin3GSE2169rre1 and rre2 mutants
46.199.8GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
43.299.8GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.563e-108393At3g55980824764SZF1 (SALT-INDUCIBLE ZINC FINGER 1)F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAVC.G.S.X.
0.125e-27123At2g41900818790zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFBVAC.G.S.X.
0.144e-1583At5g58620835976zinc finger (CCCH-type) family proteinF:transcription factor activity;P:regulation of transcription;C:endomembrane system;MOPFBVAC.G.S.X.
0.042e-1171At5g12850831125zinc finger (CCCH-type) family proteinF:transcription factor activity;P:regulation of transcription;C:cytoplasm;MOPFBVAC.G.S.X.
0.052e-552At1g03790839408SOM (SOMNUS)Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).C.G.S.X.
0.051e-346At2g19810816500zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POMC.G.S.X.
0.026e-240At5g44260834449zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.192e-20101Glycine maxGmaAffx.87513.1.S1_atCA800335--9e-21At2g40140CZF1C.G.S.X.
0.022e-654Hordeum vulgareContig6759_atContig6759--2e-5At3g55980SZF1 (SALT-INDUCIBLE ZINC FINGER 1)C.G.S.X.
0.037e-344Oryza sativaOs05g0128200AK099898.1-Transposable element Mu1 sequence3e-6At5g07500PEI1C.G.S.X.
0.172e-1791Populus trichocarpaPtp.6284.1.S1_atBU815355hypothetical protein-2e-13At5g58620zinc finger (CCCH-type) family proteinC.G.S.X.
0.036e-240Triticum aestivumTaAffx.106069.1.S1_atCK216974--2e-3At5g07500PEI1C.G.S.X.
0.063e-446Vitis vinifera1611185_atCB978682hypothetical protein LOC100258822-4e-30At2g41900zinc finger (CCCH-type) family proteinC.G.S.X.
0.021e-138Zea maysZm.8082.1.A1_atBM072860hypothetical protein LOC100280326-2e+0At5g46020unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
XGO:0050832Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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