CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g40110

Gene name yippee family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At2g40110 818600 yippee family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.57 73.8 At2g28110 817357 FRA8 (FRAGILE FIBER 8) Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings. S.X. H.G.
0.57 73.8 At3g10910 820261 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB S.X. H.G.
0.36 43.6 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.36 43.6 At4g35060 829658 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.1 99.8 E-MEXP-509-raw-cel-829148703
32.8 99.7 GSM131179 AtGen_D-11_1-PS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
32.6 99.7 GSM131169 AtGen_D-1_1-DL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
31.7 99.7 GSM131181 AtGen_D-13_1-BS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
31.5 99.7 GSM131176 AtGen_D-8_1-WL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
28.9 99.7 GSM131178 AtGen_D-10_1-FS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
28.6 99.7 GSM131199 AtGen_D-33_3-DL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
27.3 99.7 GSM131208 AtGen_D-42_3-FS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
27.1 99.7 GSM131206 AtGen_D-40_3-WL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
26.6 99.7 GSM131180 AtGen_D-12_1-RS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.69 4e-30 131 At3g55890 824755 yippee family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.30 8e-7 54 At3g11230 820293 yippee family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPO C.G. S.X.
0.03 2e-1 36 At1g28310 839725 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOBF C.G. S.X.
0.01 7e-1 34 At5g37630 833741 EMB2656 (EMBRYO DEFECTIVE 2656) F:binding;P:embryonic development ending in seed dormancy, mitotic chromosome condensation;C:cellular_component unknown;MFOPB C.G. S.X.
0.03 7e-1 34 At5g61620 836284 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POM C.G. S.X.
0.04 7e-1 34 At5g53940 835477 yippee family protein F:unknown;P:biological_process unknown;C:unknown;MFPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 7e-48 190 Glycine max Gma.6415.1.S1_at BE819876 - - 6e-40 At2g40110 yippee family protein C.G. S.X.
0.06 9e-2 36 Hordeum vulgare Contig22190_s_at Contig22190 - - 4e-2 At4g27745 - C.G. S.X.
0.09 7e-12 71 Oryza sativa Os03g0698500 AK121032.1 - Yippee-like protein 4 4e-1 At2g40110 yippee family protein C.G. S.X.
0.51 7e-42 171 Populus trichocarpa PtpAffx.11331.2.S1_at CK115901 hypothetical protein - 9e-42 At2g40110 yippee family protein C.G. S.X.
0.09 8e-1 34 Triticum aestivum Ta.9519.1.S1_at BJ283067 - - 3e-14 At3g55890 yippee family protein C.G. S.X.
0.23 4e-18 89 Vitis vinifera 1621485_at CB971472 hypothetical protein LOC100258793 - 2e-17 At2g40110 yippee family protein C.G. S.X.
0.10 1e-3 42 Zea mays Zm.4875.1.S1_at AI691556 protein yippee-like - 9e-3 At2g40110 yippee family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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