Gene omics information

Query gene ID At2g40110
Gene name yippee family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2115.8At2g40110818600yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.5773.8At2g28110817357FRA8 (FRAGILE FIBER 8)Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.S.X.H.G.
0.5773.8At3g10910820261zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBS.X.H.G.
0.3643.6At2g37750818352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.3643.6At4g35060829658heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.899.7GSM131179AtGen_D-11_1-PS_REP1_ATH1GSE5617AtGenExpress: Light treatments
32.699.7GSM131169AtGen_D-1_1-DL_REP1_ATH1GSE5617AtGenExpress: Light treatments
31.799.7GSM131181AtGen_D-13_1-BS_REP1_ATH1GSE5617AtGenExpress: Light treatments
31.599.7GSM131176AtGen_D-8_1-WL_REP1_ATH1GSE5617AtGenExpress: Light treatments
28.999.7GSM131178AtGen_D-10_1-FS_REP1_ATH1GSE5617AtGenExpress: Light treatments
28.699.7GSM131199AtGen_D-33_3-DL_REP3_ATH1GSE5617AtGenExpress: Light treatments
27.399.7GSM131208AtGen_D-42_3-FS_REP3_ATH1GSE5617AtGenExpress: Light treatments
27.199.7GSM131206AtGen_D-40_3-WL_REP3_ATH1GSE5617AtGenExpress: Light treatments
26.699.7GSM131180AtGen_D-12_1-RS_REP1_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.694e-30131At3g55890824755yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.308e-754At3g11230820293yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOC.G.S.X.
0.032e-136At1g28310839725Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOBFC.G.S.X.
0.017e-134At5g37630833741EMB2656 (EMBRYO DEFECTIVE 2656)F:binding;P:embryonic development ending in seed dormancy, mitotic chromosome condensation;C:cellular_component unknown;MFOPBC.G.S.X.
0.037e-134At5g61620836284myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POMC.G.S.X.
0.047e-134At5g53940835477yippee family proteinF:unknown;P:biological_process unknown;C:unknown;MFPOC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.477e-48190Glycine maxGma.6415.1.S1_atBE819876--6e-40At2g40110yippee family proteinC.G.S.X.
0.069e-236Hordeum vulgareContig22190_s_atContig22190--4e-2At4g27745-C.G.S.X.
0.097e-1271Oryza sativaOs03g0698500AK121032.1-Yippee-like protein 44e-1At2g40110yippee family proteinC.G.S.X.
0.517e-42171Populus trichocarpaPtpAffx.11331.2.S1_atCK115901hypothetical protein-9e-42At2g40110yippee family proteinC.G.S.X.
0.098e-134Triticum aestivumTa.9519.1.S1_atBJ283067--3e-14At3g55890yippee family proteinC.G.S.X.
0.234e-1889Vitis vinifera1621485_atCB971472hypothetical protein LOC100258793-2e-17At2g40110yippee family proteinC.G.S.X.
0.101e-342Zea maysZm.4875.1.S1_atAI691556protein yippee-like-9e-3At2g40110yippee family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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