CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g39850

Gene name identical protein binding / serine-type endopeptidase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.47 61.2 At2g39850 818572 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM S.X. H.G.
0.63 78.1 At1g67865 843114 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At1g64370 842744 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBP S.X. H.G.
0.46 59.8 At1g67870 843115 glycine-rich protein F:unknown;P:biological_process unknown;C:unknown;MOBPFAV S.X. H.G.
0.38 46.7 At2g32860 817847 BGLU33 (BETA GLUCOSIDASE 33) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA S.X. H.G.
0.38 46.7 At3g61210 825293 embryo-abundant protein-related F:unknown;P:unknown;C:cellular_component unknown;BPFOMA S.X. H.G.
0.22 17.5 At1g23130 838921 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
129.4 99.9 GSM27366 lec1-1 Stem GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
73.3 99.9 GSM133749 Turner_A-3-Turne-Mut-Base1_SLD GSE5729 Role of COV in vascular patterning
68.8 99.9 GSM142639 MC002_ATH1_A6.2-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
47.6 99.8 GSM133750 Turner_A-4-Turne-Mut-Base2_SLD GSE5729 Role of COV in vascular patterning
43.3 99.8 GSM133754 Turner_A-8-Turne-WT-Base2_SLD GSE5729 Role of COV in vascular patterning
41.5 99.8 GSM142640 MC002_ATH1_A6.3-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
40.4 99.8 E-MEXP-509-raw-cel-829148456
38.5 99.8 E-TABM-209-raw-cel-1316546455
36.7 99.7 GSM142638 MC002_ATH1_A6.1-dubos-5kc_repeat GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
28.8 99.7 E-TABM-209-raw-cel-1316546503
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-4 48 At5g03620 831777 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.01 5e-3 44 At4g21630 828250 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM C.G. S.X.
0.01 5e-3 44 At4g21650 828252 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM C.G. S.X.
0.01 2e-2 42 At5g10740 830941 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOBFVA C.G. S.X.
0.01 7e-2 40 At5g24940 832564 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOBFAV C.G. S.X.
0.03 3e-1 38 At5g45640 834604 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPFOMA C.G. S.X.
0.01 3e-1 38 At3g12870 820470 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e-1 38 At2g04160 814953 AIR3 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. C.G. S.X.
0.01 1e+0 36 At5g56690 835770 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-6 54 Glycine max GmaAffx.77021.1.S1_at BU546763 - - 2e-6 At2g39850 identical protein binding / serine-type endopeptidase C.G. S.X.
0.01 9e+0 32 Hordeum vulgare HVSMEb0008C20r2_x_at HVSMEb0008C20r2 - - 4e+0 At5g02360 DC1 domain-containing protein C.G. S.X.
0.01 2e+0 36 Oryza sativa Os01g0702300 NM_192217.1 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 1e+0 At2g39850 identical protein binding / serine-type endopeptidase C.G. S.X.
0.04 7e-3 44 Populus trichocarpa PtpAffx.209313.1.S1_at pmrna18406 hypothetical protein - 3e-1 At5g59130 subtilase family protein C.G. S.X.
0.01 5e+0 34 Triticum aestivum TaAffx.23739.1.S1_at CA731160 - - 1e+0 At5g37730 unknown protein C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1606531_at CB910664 hypothetical protein LOC100257444 - 7e-2 At5g51750 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) C.G. S.X.
0.01 5e-1 36 Zea mays Zm.15027.1.A1_at BM268637 catalytic/ hydrolase - 7e+0 At3g62040 catalytic/ hydrolase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L GO:0043086 Any process that stops or reduces the activity of an enzyme.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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