CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g39750

Gene name dehydration-responsive family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At2g39750 818560 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:unknown;PMOBFVA S.X. H.G.
0.73 85.5 At3g58970 825066 magnesium transporter CorA-like family protein F:metal ion transmembrane transporter activity;P:metal ion transport;C:plasma membrane, membrane;PFOMBAV S.X. H.G.
0.67 81.6 At1g57870 842162 ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MOPFBVA S.X. H.G.
0.53 68.6 At5g04920 830374 vacuolar protein sorting 36 family protein / VPS36 family protein F:transporter activity;P:vesicle-mediated transport;C:ESCRT II complex;MFOP S.X. H.G.
0.33 38.1 At3g56460 824813 oxidoreductase, zinc-binding dehydrogenase family protein F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOFMPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
82.2 99.9 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.4 99.6 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
21.7 99.6 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
19.3 99.6 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
18.8 99.5 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
17.0 99.5 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
15.8 99.5 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
13.9 99.4 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
12.4 99.3 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
11.8 99.3 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 5e-92 339 At5g06050 830492 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:endomembrane system;PBOM C.G. S.X.
0.21 8e-20 99 At1g77260 844062 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOM C.G. S.X.
0.05 2e-8 61 At4g14360 827079 dehydration-responsive protein-related F:unknown;P:N-terminal protein myristoylation;C:Golgi apparatus;PBO C.G. S.X.
0.03 1e-6 56 At3g23300 821910 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane, nucleus;PBO C.G. S.X.
0.01 1e-3 46 At1g33170 840213 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:unknown;PBOAM C.G. S.X.
0.01 2e-2 42 At2g34300 817991 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-65 252 Glycine max GmaAffx.85050.1.S1_at AW311557 - - 1e-65 At2g39750 dehydration-responsive family protein C.G. S.X.
0.02 3e-5 50 Hordeum vulgare Contig8375_at Contig8375 - - 1e-37 At3g23300 dehydration-responsive protein-related C.G. S.X.
0.18 2e-28 129 Oryza sativa Os01g0846600 AK070193.1 - Putative methyltransferase DUF248 family protein 1e-28 At2g39750 dehydration-responsive family protein C.G. S.X.
0.40 9e-76 286 Populus trichocarpa PtpAffx.207723.1.S1_s_at pmrna15345 hypothetical protein - 8e-76 At2g39750 dehydration-responsive family protein C.G. S.X.
0.02 7e-5 50 Triticum aestivum Ta.12212.1.S1_at BQ171827 - - 2e+0 At2g35658 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1614867_at CF200921.1 hypothetical protein LOC100263750 - 2e-9 At3g17180 scpl33 (serine carboxypeptidase-like 33) C.G. S.X.
0.02 2e+0 34 Zea mays Zm.2977.1.A1_at AW155840 - - 1e-5 At2g40280 dehydration-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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