CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g39660

Gene name BIK1 (BOTRYTIS-INDUCED KINASE1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g39660 818549 BIK1 (BOTRYTIS-INDUCED KINASE1) Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. S.X. H.G.
0.40 50.8 At2g02220 814753 PSKR1 (PHYTOSULFOKIN RECEPTOR 1) Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). S.X. H.G.
0.33 38.1 At1g18390 838420 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.19 12.7 At5g24430 832514 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVA S.X. H.G.
0.11 4.1 At3g02880 821198 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:anchored to plasma membrane, cell wall, plasma membrane, membrane, plant-type cell wall;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
119.7 99.9 E-MEXP-1443-raw-cel-1581869863
85.8 99.9 E-MEXP-1443-raw-cel-1581869921
56.5 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
54.5 99.8 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
47.7 99.8 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
45.8 99.8 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
41.8 99.8 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
36.0 99.7 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
34.6 99.7 GSM131134 AtGen_B-20_2-6-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
34.2 99.7 GSM205156 protoplast_controlDNA_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 6e-81 301 At3g55450 824711 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.27 2e-22 107 At5g02290 831880 NAK Encodes a candidate protein kinase NAK that is similar to the oncogenes met and abl. C.G. S.X.
0.21 7e-16 85 At2g28930 817442 APK1B F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.03 2e-10 67 At3g01300 820989 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.20 2e-7 57 At1g07570 837271 APK1A Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-14 81 Glycine max GmaAffx.74918.1.S1_at AW755458 - - 9e-5 At5g02290 NAK C.G. S.X.
0.05 3e-1 36 Hordeum vulgare Contig9237_at Contig9237 - - 6e-8 At1g07570 APK1A C.G. S.X.
0.08 2e-5 52 Oryza sativa OsAffx.15194.1.S1_at - - - 0 C.G. S.X.
0.20 4e-12 73 Populus trichocarpa PtpAffx.145419.1.S1_at DN499425 hypothetical protein - 5e-13 At5g02290 NAK C.G. S.X.
0.08 2e-7 57 Triticum aestivum TaAffx.120688.1.S1_at CA602397 - - 1e-11 At5g01020 protein kinase family protein C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1622435_at CF206114.1 hypothetical protein LOC100249381 - 1e-13 At1g32130 - C.G. S.X.
0.03 2e-2 40 Zea mays Zm.4140.1.S1_at BE552528 hypothetical protein LOC100191980 - 2e-17 At1g69790 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009620 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.
X GO:0046777 The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein.
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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