CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g39550

Gene name PGGT-I

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g39550 818540 PGGT-I encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways. S.X. H.G.
0.53 68.6 At1g28120 839705 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.49 63.5 At3g15610 820803 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA S.X. H.G.
0.48 62.5 At5g59210 836039 myosin heavy chain-related F:unknown;P:biological_process unknown;C:unknown;MOBFPAV S.X. H.G.
0.42 53.9 At3g14410 820663 transporter-related F:organic anion transmembrane transporter activity;P:unknown;C:cytosolic ribosome;PMFOBA S.X. H.G.
0.41 52.4 At3g51390 824302 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:plasma membrane;MOFP S.X. H.G.
0.40 50.8 At1g09330 837454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOP S.X. H.G.
0.39 48.4 At3g21865 821741 PEX22 (peroxin 22) Interacts with PEX4 in a yeast two-hybrid. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes. S.X. H.G.
0.38 46.7 At1g76140 843946 serine-type endopeptidase/ serine-type peptidase F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:chloroplast;OBMPAF S.X. H.G.
0.38 46.7 At3g09300 820086 ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.5 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
51.0 99.8 GSM133778 Lindsey_1-2_globular-apical_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.3 99.7 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.1 99.7 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.3 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
18.6 99.5 GSM226547 Slice5JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.5 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.3 99.5 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
15.3 99.4 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
15.2 99.4 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 9e-3 42 At3g11080 820279 AtRLP35 (Receptor Like Protein 35) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAV C.G. S.X.
0.02 9e-3 42 At1g72890 843620 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO C.G. S.X.
0.02 4e-2 40 At4g39870 830146 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV C.G. S.X.
0.01 4e-2 40 At4g17620 827482 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPVA C.G. S.X.
0.01 4e-2 40 At4g08350 826391 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA C.G. S.X.
0.02 4e-2 40 At1g23980 839010 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB C.G. S.X.
0.01 4e-2 40 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-15 85 Glycine max GmaAffx.86511.1.S1_at BG789938 - - 3e-16 At2g39550 PGGT-I C.G. S.X.
0.04 2e-2 40 Hordeum vulgare Contig15465_at Contig15465 - - 2e-2 At2g39550 PGGT-I C.G. S.X.
0.11 8e-11 69 Oryza sativa Os.12757.4.S1_x_at - - - 0 C.G. S.X.
0.11 1e-8 61 Populus trichocarpa PtpAffx.9411.1.A1_at BP934185 hypothetical protein - 5e-9 At2g39550 PGGT-I C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.79150.1.S1_x_at CA720712 - - 3e+0 At5g17650 glycine/proline-rich protein C.G. S.X.
0.08 5e-11 67 Vitis vinifera 1611196_at CF212936 hypothetical protein LOC100241042 - 7e-11 At2g39550 PGGT-I C.G. S.X.
0.02 4e+0 32 Zea mays Zm.8348.1.A1_at BM073795 Hypothetical protein LOC100193915 - 3e-1 At3g20750 zinc finger (GATA type) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
X GO:0018348 The covalent attachment of a geranylgeranyl moiety to a protein amino acid.
X GO:0018344 The enzymatic addition of a geranylgeranyl moiety to a protein as a posttranslational modification.
S GO:0009788 Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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