CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g39530

Gene name integral membrane protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At2g39530 818538 integral membrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:membrane;P S.X. H.G.
0.50 65.3 At3g55150 824681 ATEXO70H1 (exocyst subunit EXO70 family protein H1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.44 57.2 At5g48430 834898 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P S.X. H.G.
0.40 50.8 At1g51850 841612 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
0.38 46.7 At3g46280 823773 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
117.4 99.9 GSM218590 Protoplasted root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
71.4 99.9 GSM184536 Protoplasted root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
67.3 99.8 GSM142833 MG001_ATH1_A10-Torres-5N1 GSE6176 Impact of Type III effectors on plant defense responses
67.1 99.8 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
63.2 99.8 GSM184478 Lateral Root Cap root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
59.0 99.8 GSM142836 MG001_ATH1_A15-Torres-4N6 GSE6176 Impact of Type III effectors on plant defense responses
51.9 99.8 GSM142834 MG001_ATH1_A12-Torres-5N6 GSE6176 Impact of Type III effectors on plant defense responses
51.7 99.8 E-MEXP-1094-raw-cel-1379507313
51.3 99.8 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
47.9 99.8 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 7e-76 284 At2g39518 5007945 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 3e-1 36 At5g63370 836456 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA C.G. S.X.
0.02 3e-1 36 At3g14640 820692 CYP72A10 putative cytochrome P450 C.G. S.X.
0.02 1e+0 34 At5g50160 835081 FRO8 (FERRIC REDUCTION OXIDASE 8) Encodes a ferric chelate reductase that is expressed in shoots and flowers. C.G. S.X.
0.02 1e+0 34 At2g27200 817262 GTP-binding family protein F:GTP binding;P:biological_process unknown;C:intracellular;BOMFPA C.G. S.X.
0.02 4e+0 32 At5g64670 836588 ribosomal protein L15 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, large ribosomal subunit;BOMFP C.G. S.X.
0.01 4e+0 32 At5g64030 836524 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max HgAffx.3699.2.S1_at AF273728.2 - - 1e+0 At2g39530 integral membrane protein, putative C.G. S.X.
0.04 5e-1 34 Hordeum vulgare Contig19106_at Contig19106 - - 5e-2 At4g16240 unknown protein C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.12140.1.S1_at - - - 0 C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.11331.3.S1_at CV270477 hypothetical protein - 2e-5 At2g40110 yippee family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.2084.3.S1_at CA723275 - - 3e+0 At5g42635 glycine-rich protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1608627_at CF513958 - - 3e+0 At2g39530 integral membrane protein, putative C.G. S.X.
0.03 4e-1 34 Zea mays Zm.12208.1.A1_at BM736144 - - 3e-4 At3g14630 CYP72A9 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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