Gene omics information

Query gene ID At2g39530
Gene name integral membrane protein, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2522.6At2g39530818538integral membrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:membrane;PS.X.H.G.
0.5065.3At3g55150824681ATEXO70H1 (exocyst subunit EXO70 family protein H1)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.4457.2At5g48430834898aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PS.X.H.G.
0.4050.8At1g51850841612leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAS.X.H.G.
0.3846.7At3g46280823773protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
117.499.9GSM218590Protoplasted root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
71.499.9GSM184536Protoplasted root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
67.399.8GSM142833MG001_ATH1_A10-Torres-5N1GSE6176Impact of Type III effectors on plant defense responses
67.199.8GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
63.299.8GSM184478Lateral Root Cap root cells 2hr KCl control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
59.099.8GSM142836MG001_ATH1_A15-Torres-4N6GSE6176Impact of Type III effectors on plant defense responses
51.999.8GSM142834MG001_ATH1_A12-Torres-5N6GSE6176Impact of Type III effectors on plant defense responses
51.799.8E-MEXP-1094-raw-cel-1379507313
51.399.8GSM128686Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
47.999.8GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.567e-76284At2g395185007945-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.013e-136At5g63370836456protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAC.G.S.X.
0.023e-136At3g14640820692CYP72A10putative cytochrome P450C.G.S.X.
0.021e+034At5g50160835081FRO8 (FERRIC REDUCTION OXIDASE 8)Encodes a ferric chelate reductase that is expressed in shoots and flowers.C.G.S.X.
0.021e+034At2g27200817262GTP-binding family proteinF:GTP binding;P:biological_process unknown;C:intracellular;BOMFPAC.G.S.X.
0.024e+032At5g64670836588ribosomal protein L15 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, large ribosomal subunit;BOMFPC.G.S.X.
0.014e+032At5g64030836524dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxHgAffx.3699.2.S1_atAF273728.2--1e+0At2g39530integral membrane protein, putativeC.G.S.X.
0.045e-134Hordeum vulgareContig19106_atContig19106--5e-2At4g16240unknown proteinC.G.S.X.
0.042e+034Oryza sativaOsAffx.12140.1.S1_at---0C.G.S.X.
0.031e+034Populus trichocarpaPtpAffx.11331.3.S1_atCV270477hypothetical protein-2e-5At2g40110yippee family proteinC.G.S.X.
0.041e+034Triticum aestivumTaAffx.2084.3.S1_atCA723275--3e+0At5g42635glycine-rich proteinC.G.S.X.
0.031e+032Vitis vinifera1608627_atCF513958--3e+0At2g39530integral membrane protein, putativeC.G.S.X.
0.034e-134Zea maysZm.12208.1.A1_atBM736144--3e-4At3g14630CYP72A9C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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