CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g39430

Gene name disease resistance-responsive protein-related / dirigent protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO S.X. H.G.
0.97 97.6 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA S.X. H.G.
0.97 97.6 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
0.97 97.6 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB S.X. H.G.
0.97 97.6 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.94 96.7 At1g71740 843504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At2g30210 817571 LAC3 (laccase 3) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.93 96.4 At2g36100 818183 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At3g11550 820328 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
346.4 100.0 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
329.2 100.0 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
252.0 100.0 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
220.1 100.0 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
172.5 100.0 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
171.7 100.0 GSM133993 Birnbaum_1-26_J0571-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
138.1 99.9 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
118.5 99.9 GSM133971 Birnbaum_1-1_src5-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
114.8 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
113.4 99.9 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 1e-35 151 At3g55230 824689 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;PM C.G. S.X.
0.02 3e-2 40 At3g12480 820427 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOB C.G. S.X.
0.03 5e-1 36 At3g45110 823647 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e-1 36 At3g45890 823732 RUS1 (ROOT UVB SENSITIVE 1) Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes. The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB. C.G. S.X.
0.01 5e-1 36 At1g80010 844341 FRS8 (FAR1-related sequence 8) F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFM C.G. S.X.
0.02 2e+0 34 At4g25180 828621 DNA binding / DNA-directed RNA polymerase F:DNA-directed RNA polymerase activity, DNA binding;P:transcription from RNA polymerase III promoter;C:DNA-directed RNA polymerase III complex;MPOFB C.G. S.X.
0.02 2e+0 34 At4g33770 829519 inositol 1,3,4-trisphosphate 5/6-kinase family protein F:inositol or phosphatidylinositol kinase activity, magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, inositol tetrakisphosphate 1-kinase activity, ATP binding;P:inositol trisphosphate metabolic process;C:intracellular;PMO C.G. S.X.
0.01 2e+0 34 At3g33520 823150 ATARP6 Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max HgAffx.21838.1.S1_at CB826478 - - 1e+0 At5g66870 ASL1 C.G. S.X.
0.03 9e-1 34 Hordeum vulgare HM05H21r_at HM05H21r - - 9e-1 At2g39430 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
0.02 9e-1 36 Oryza sativa Os07g0224900 AK111745.1 - WD40-like domain containing protein 1e+0 At2g47990 SWA1 (SLOW WALKER1) C.G. S.X.
0.05 7e-1 36 Populus trichocarpa PtpAffx.209357.1.S1_at pmrna18531 hypothetical protein - 5e-1 At2g39430 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
0.03 8e+0 32 Triticum aestivum TaAffx.120288.1.S1_at BJ233387 - - 1e+0 At2g43140 DNA binding / transcription factor C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1609222_at CF518991 hypothetical protein LOC100263588 - 5e-9 At4g10250 ATHSP22.0 C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.440.1.A1_at AI676978 - - 2e-4 At1g54410 dehydrin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009807 The chemical reactions and pathways resulting in the formation of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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