CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g39350

Gene name ABC transporter family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At2g39350 818520 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPV S.X. H.G.
0.40 50.8 At4g16230 827317 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.19 12.7 At1g61840 842481 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM S.X. H.G.
0.18 11.4 At4g14980 827157 - F:unknown;P:intracellular signaling cascade;C:unknown;POMF S.X. H.G.
0.15 7.8 At3g10720 820241 pectinesterase, putative F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
267.0 100.0 GSM184484 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
172.0 100.0 GSM184488 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
155.4 99.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
153.6 99.9 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
92.7 99.9 GSM184491 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
89.6 99.9 GSM184478 Lateral Root Cap root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
80.2 99.9 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
78.9 99.9 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
75.2 99.9 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
67.5 99.8 GSM184482 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.66 7e-150 531 At3g55090 824675 ATPase, coupled to transmembrane movement of substances F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPV C.G. S.X.
0.21 4e-34 147 At3g55130 824679 ATWBC19 (White-Brown Complex homolog 19) Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin. C.G. S.X.
0.35 6e-30 133 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV C.G. S.X.
0.18 6e-27 123 At3g53510 824519 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV C.G. S.X.
0.16 1e-25 119 At2g37360 818312 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV C.G. S.X.
0.15 6e-21 103 At3g55110 824677 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV C.G. S.X.
0.19 5e-9 63 At3g55100 824676 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV C.G. S.X.
0.01 3e-4 48 At1g53270 841761 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 38 Glycine max GmaAffx.86901.1.S1_at BI942268 - - 1e-3 At3g55090 ATPase, coupled to transmembrane movement of substances C.G. S.X.
0.01 4e-2 40 Hordeum vulgare Contig10887_at Contig10887 - - 3e-10 At1g53390 ATPase, coupled to transmembrane movement of substances C.G. S.X.
0.05 2e-6 56 Oryza sativa Os01g0836600 AK067556.1 - ABC transporter related domain containing protein 2e-2 At3g53510 ABC transporter family protein C.G. S.X.
0.30 2e-18 95 Populus trichocarpa PtpAffx.209366.1.S1_at pmrna18547 white-brown-complex ABC transporter family - 1e-18 At2g39350 ABC transporter family protein C.G. S.X.
0.09 2e-5 52 Triticum aestivum TaAffx.31120.1.S1_at CA619349 - - 5e-6 At2g39350 ABC transporter family protein C.G. S.X.
0.01 5e+0 32 Vitis vinifera 1621467_at CA817542 hypothetical protein LOC100242259 - 3e-1 At2g30420 ETC2 C.G. S.X.
0.05 8e-6 52 Zea mays Zm.8175.1.A1_at BM382448 - - 5e-6 At2g39350 ABC transporter family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009624 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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