CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g39260

Gene name RNA binding / binding / protein binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.70 83.5 At2g39260 818511 RNA binding / binding / protein binding F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.78 88.6 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA S.X. H.G.
0.77 88.0 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.71 84.2 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. S.X. H.G.
0.67 81.6 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA S.X. H.G.
0.67 81.6 At1g74250 843765 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:intracellular;MOBFPVA S.X. H.G.
0.67 81.6 At3g19650 821502 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.61 76.7 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
231.9 100.0 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
228.7 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
175.8 100.0 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
173.2 100.0 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
134.3 99.9 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
114.5 99.9 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
114.2 99.9 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
107.1 99.9 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
106.4 99.9 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
105.1 99.9 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 40 At5g50410 835109 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e-1 40 At4g09270 826510 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.01 1e-1 40 At4g09220 826504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.01 1e-1 40 At1g59590 842249 ZCF37 ZCF37 mRNA, complete cds C.G. S.X.
0.01 4e-1 38 At5g49630 835025 AAP6 (AMINO ACID PERMEASE 6) Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem. C.G. S.X.
0.01 4e-1 38 At3g15353 820771 MT3 (METALLOTHIONEIN 3) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage C.G. S.X.
0.01 2e+0 36 At5g38314 6240246 unknown protein F:unknown;P:unknown;C:endomembrane system C.G. S.X.
0.01 2e+0 36 At5g51550 835229 EXL3 (EXORDIUM LIKE 3) F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-27 125 Glycine max GmaAffx.23430.1.S1_at BM086225 - - 3e-28 At2g39260 RNA binding / binding / protein binding C.G. S.X.
0.01 9e-1 36 Hordeum vulgare Contig19681_at Contig19681 - - 1e-1 At3g18990 VRN1 (REDUCED VERNALIZATION RESPONSE 1) C.G. S.X.
0.17 3e-31 139 Oryza sativa Os02g0631500 9630.m04022 - Up-frameshift suppressor 2 family protein 6e-28 At2g39260 RNA binding / binding / protein binding C.G. S.X.
0.34 2e-65 252 Populus trichocarpa PtpAffx.209374.1.S1_at pmrna18566 hypothetical protein - 1e-65 At2g39260 RNA binding / binding / protein binding C.G. S.X.
0.09 2e-21 105 Triticum aestivum Ta.6471.1.S1_at BJ306369 - - 1e-21 At2g39260 RNA binding / binding / protein binding C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1610080_at CF513601 hypothetical protein LOC100266617 - 5e-19 At1g56420 unknown protein C.G. S.X.
0.01 3e+0 34 Zea mays Zm.4415.1.A1_at BM080841 hypothetical protein LOC100274900 - 5e-3 At3g50550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006412 The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
L GO:0016070 The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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