CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g39210

Gene name nodulin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.24 20.7 At2g39210 818506 nodulin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMA S.X. H.G.
0.53 68.6 At1g51790 841605 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.50 65.3 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.50 65.3 At1g51890 841616 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.50 65.3 At4g20860 827834 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to cyclopentenone;C:endomembrane system;BFPOAM S.X. H.G.
0.33 38.1 At1g61380 842432 SD1-29 (S-DOMAIN-1 29) F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.7 99.8 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
58.4 99.8 E-NASC-76-raw-cel-1359878900
55.4 99.8 E-NASC-76-raw-cel-1359878976
49.1 99.8 E-NASC-76-raw-cel-1359879158
46.0 99.8 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
43.2 99.8 E-ATMX-13-raw-cel-1556149887
42.8 99.8 GSM142851 MG001_ATH1_A4-Torres-2N1 GSE6176 Impact of Type III effectors on plant defense responses
40.8 99.8 E-MEXP-1094-raw-cel-1379507313
39.9 99.8 E-ATMX-13-raw-cel-1556149871
38.8 99.8 GSM142852 MG001_ATH1_A5-Torres-2N3 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-2 42 At2g28120 817358 nodulin family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;OBPFMA C.G. S.X.
0.01 2e-1 38 At3g05630 819730 PLDP2 Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. C.G. S.X.
0.01 9e-1 36 At5g61510 836272 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:cell differentiation, response to high light intensity;C:unknown;BOFMPAV C.G. S.X.
0.02 9e-1 36 At5g06190 830506 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 9e-1 36 At4g27595 828870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.01 9e-1 36 At2g31985 817759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF C.G. S.X.
0.01 9e-1 36 At1g48360 841256 hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;BFMOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-4 48 Glycine max GmaAffx.26311.1.S1_at BE348003 - - 5e-2 At2g28120 nodulin family protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig24850_at Contig24850 - - 5e+0 At2g12462 unknown protein C.G. S.X.
0.04 1e-4 50 Oryza sativa Os07g0187900 AK062594.1 - Nodule-specific protein-like 8e-5 At2g39210 nodulin family protein C.G. S.X.
0.07 1e+0 36 Populus trichocarpa PtpAffx.219784.1.S1_at pmrna35863 hypothetical protein - 2e-11 At2g28120 nodulin family protein C.G. S.X.
0.02 6e-2 40 Triticum aestivum TaAffx.7212.1.S1_at CA665244 - - 4e+0 At2g22860 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) C.G. S.X.
0.04 7e-5 48 Vitis vinifera 1622426_at CF205289.1 - - 9e-5 At2g39210 nodulin family protein C.G. S.X.
0.02 1e-1 38 Zea mays Zm.13560.1.S1_at AY108106.1 hypothetical protein LOC100193917 - 6e-1 At5g58720 PRLI-interacting factor, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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