Gene omics information

Query gene ID At2g38905
Gene name hydrophobic protein, putative / low temperature and salt responsive protein, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g38905818475hydrophobic protein, putative / low temperature and salt responsive protein, putativeF:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMOS.X.H.G.
0.8290.9At4g16160827308mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinHomologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.S.X.H.G.
0.6781.6At2g25890817130glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PBS.X.H.G.
0.5469.5At2g21490816688LEA (DEHYDRIN LEA)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBVS.X.H.G.
0.4659.8At1g73190843653TIP3Moves to the Protein Storage Vacuole in a Golgi independent mannerS.X.H.G.
0.4253.9At3g15280820759unknown proteinF:molecular_function unknown;P:unknown;C:mitochondrion;PMS.X.H.G.
0.4050.8At1g54870841926binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAVS.X.H.G.
0.3948.4At1g04560839491AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.3643.6At3g18570821388glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PS.X.H.G.
0.3541.6At4g31830829312unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
187.7100.0GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
178.7100.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
178.6100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
177.0100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
167.5100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
166.9100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
160.599.9GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
154.799.9GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
148.099.9GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
140.799.9GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-134At5g60360836158AALP (Arabidopsis aleurain-like protease)Encodes a senescence-associated thiol protease.C.G.S.X.
0.033e-134At2g29980817548FAD3 (FATTY ACID DESATURASE 3)Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.C.G.S.X.
0.011e+032At3g45440823682lectin protein kinase family proteinF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.021e+032At3g07620819953exostosin family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBFC.G.S.X.
0.011e+032At3g42660823286nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAVC.G.S.X.
0.035e+030At5g45095834542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.064e-134Glycine maxGmaAffx.72173.1.A1_atBE822011--7e-1At2g38905hydrophobic protein, putative / low temperature and salt responsive protein, putativeC.G.S.X.
0.152e-1063Hordeum vulgareContig9808_atContig9808--1e-9At2g38905hydrophobic protein, putative / low temperature and salt responsive protein, putativeC.G.S.X.
0.157e-1063Oryza sativaOs03g0286900AK070872.1-Low-temperature induced protein lt101.21e-9At2g38905hydrophobic protein, putative / low temperature and salt responsive protein, putativeC.G.S.X.
0.102e+032Populus trichocarpaPtpAffx.4286.8.S1_atCA823427--1e-11At3g05880RCI2A (RARE-COLD-INDUCIBLE 2A)C.G.S.X.
0.152e-238Triticum aestivumTa.28346.3.S1_x_atCA610936--7e-2At2g38905hydrophobic protein, putative / low temperature and salt responsive protein, putativeC.G.S.X.
0.189e-544Vitis vinifera1620163_x_atCK138257.1hypothetical protein LOC100247965-6e-4At2g38905hydrophobic protein, putative / low temperature and salt responsive protein, putativeC.G.S.X.
0.175e-442Zea maysZm.14699.1.S1_atCB179569hypothetical protein LOC100276319-5e-3At2g38905hydrophobic protein, putative / low temperature and salt responsive protein, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
CGO:0042538A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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