CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g38905

Gene name hydrophobic protein, putative / low temperature and salt responsive protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g38905 818475 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO S.X. H.G.
0.82 90.9 At4g16160 827308 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco. S.X. H.G.
0.67 81.6 At2g25890 817130 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB S.X. H.G.
0.54 69.5 At2g21490 816688 LEA (DEHYDRIN LEA) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV S.X. H.G.
0.46 59.8 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner S.X. H.G.
0.42 53.9 At3g15280 820759 unknown protein F:molecular_function unknown;P:unknown;C:mitochondrion;PM S.X. H.G.
0.40 50.8 At1g54870 841926 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV S.X. H.G.
0.39 48.4 At1g04560 839491 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.36 43.6 At3g18570 821388 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P S.X. H.G.
0.35 41.6 At4g31830 829312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
187.7 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
178.7 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
178.6 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
177.0 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
167.5 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
166.9 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
160.5 99.9 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
154.7 99.9 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
148.0 99.9 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
140.7 99.9 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-1 34 At5g60360 836158 AALP (Arabidopsis aleurain-like protease) Encodes a senescence-associated thiol protease. C.G. S.X.
0.03 3e-1 34 At2g29980 817548 FAD3 (FATTY ACID DESATURASE 3) Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. C.G. S.X.
0.01 1e+0 32 At3g45440 823682 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 1e+0 32 At3g07620 819953 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF C.G. S.X.
0.01 1e+0 32 At3g42660 823286 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAV C.G. S.X.
0.03 5e+0 30 At5g45095 834542 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-1 34 Glycine max GmaAffx.72173.1.A1_at BE822011 - - 7e-1 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
0.15 2e-10 63 Hordeum vulgare Contig9808_at Contig9808 - - 1e-9 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
0.15 7e-10 63 Oryza sativa Os03g0286900 AK070872.1 - Low-temperature induced protein lt101.2 1e-9 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
0.10 2e+0 32 Populus trichocarpa PtpAffx.4286.8.S1_at CA823427 - - 1e-11 At3g05880 RCI2A (RARE-COLD-INDUCIBLE 2A) C.G. S.X.
0.15 2e-2 38 Triticum aestivum Ta.28346.3.S1_x_at CA610936 - - 7e-2 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
0.18 9e-5 44 Vitis vinifera 1620163_x_at CK138257.1 hypothetical protein LOC100247965 - 6e-4 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
0.17 5e-4 42 Zea mays Zm.14699.1.S1_at CB179569 hypothetical protein LOC100276319 - 5e-3 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
C GO:0042538 A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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