CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g38900

Gene name serine protease inhibitor, potato inhibitor I-type family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At2g38900 818474 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. S.X. H.G.
0.90 95.1 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. S.X. H.G.
0.88 94.0 At4g12890 826901 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF S.X. H.G.
0.81 90.4 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV S.X. H.G.
0.80 89.8 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. S.X. H.G.
0.80 89.8 At3g20210 821565 DELTA-VPE Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. S.X. H.G.
0.80 89.8 At5g51950 835270 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVA S.X. H.G.
0.78 88.6 At1g24540 839069 CYP86C1 member of CYP86C S.X. H.G.
0.75 86.9 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter S.X. H.G.
0.74 86.1 At2g46960 819310 CYP709B1 member of CYP709B S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
387.1 100.0 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
369.8 100.0 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
315.1 100.0 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
299.3 100.0 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
283.9 100.0 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
276.6 100.0 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
267.8 100.0 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
257.9 100.0 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
227.9 100.0 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
172.6 100.0 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 3e-8 57 At2g38870 818471 protease inhibitor, putative Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. C.G. S.X.
0.01 2e+0 32 At2g29190 817468 APUM2 (Arabidopsis Pumilio 2) F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;FOMPB C.G. S.X.
0.02 2e+0 32 At1g71800 843510 cleavage stimulation factor, putative F:protein binding, RNA binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA C.G. S.X.
0.02 2e+0 32 At1g30930 839979 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e+0 32 At1g08750 837397 GPI-anchor transamidase, putative F:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFAB C.G. S.X.
0.01 6e+0 30 At5g42120 834217 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 6e+0 30 At5g66920 836826 sks17 (SKU5 Similar 17) F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-1 36 Glycine max GmaAffx.68483.2.S1_at AW756770 - - 1e-30 At2g41700 ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter C.G. S.X.
0.06 1e+1 28 Hordeum vulgare rbaal24m19_at rbaal24m19 - - 5e-1 At4g36600 - C.G. S.X.
0.04 2e-1 36 Oryza sativa Os.8942.1.S1_at - - - 0 C.G. S.X.
0.09 2e+0 32 Populus trichocarpa PtpAffx.224514.1.S1_at pmrna43130 - - 1e+0 At2g38900 serine protease inhibitor, potato inhibitor I-type family protein C.G. S.X.
0.05 7e+0 30 Triticum aestivum TaAffx.52355.1.S1_at CA708690 - - 1e+1 At5g48170 SLY2 (SLEEPY2) C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1614134_at CF208216 hypothetical protein LOC100257545 - 4e+0 At5g27560 unknown protein C.G. S.X.
0.05 1e+1 28 Zea mays ZmAffx.1080.1.A1_at AI948353 - - 7e-1 At1g22790 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
C GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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