CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g38880

Gene name NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g38880 818472 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. S.X. H.G.
1.00 100.0 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
1.00 100.0 At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. S.X. H.G.
1.00 100.0 At1g49530 841377 GGPS6 (geranylgeranyl pyrophosphate synthase 6) encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase S.X. H.G.
1.00 100.0 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At3g62330 825406 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.97 97.6 At4g01570 828133 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA S.X. H.G.
0.97 97.6 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P S.X. H.G.
0.97 97.6 At4g19400 827681 actin binding F:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;PO S.X. H.G.
0.97 97.6 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3214.9 100.0 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
38.4 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.1 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.7 99.2 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
9.2 99.1 GSM133812 Diamond_A-1-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
8.2 99.0 GSM133809 Diamond_A-2-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
7.7 98.9 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
7.0 98.7 GSM133814 Diamond_A-3-Diamo-met_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
6.9 98.7 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
6.8 98.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.38 7e-32 137 At2g37060 818282 NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO C.G. S.X.
0.27 1e-24 113 At3g53340 824502 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:intracellular, nucleus;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 5e-15 81 Glycine max GmaAffx.42919.1.S1_at BE821922 - - 7e-28 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) C.G. S.X.
0.07 3e-5 48 Hordeum vulgare Contig11971_at Contig11971 - - 7e-25 At5g47640 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) C.G. S.X.
0.08 3e-5 50 Oryza sativa OsAffx.23994.1.S1_x_at - - - 0 C.G. S.X.
0.38 3e-32 139 Populus trichocarpa PtpAffx.69785.2.A1_a_at CV243355 hypothetical protein - 3e-32 At2g38880 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) C.G. S.X.
0.07 2e-8 59 Triticum aestivum Ta.20537.1.S1_x_at CA648311 - - 5e-4 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) C.G. S.X.
0.08 4e-6 50 Vitis vinifera 1614136_at CB347754 hypothetical protein LOC100246668 - 7e-55 At5g47670 NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6) C.G. S.X.
0.11 6e-12 69 Zea mays Zm.10383.4.S1_a_at AY106957.1 transcription factor subunit NF-YB2 /// hypothetical protein LOC100273424 /// CAAT-box DNA binding protein subunit B (NF-YB) - 3e-12 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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