CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g38870

Gene name protease inhibitor, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At2g38870 818471 protease inhibitor, putative Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. S.X. H.G.
0.63 78.1 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity S.X. H.G.
0.59 74.7 At3g54420 824608 ATEP3 encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. S.X. H.G.
0.59 74.7 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA S.X. H.G.
0.55 70.6 At1g51800 841606 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.55 70.6 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM S.X. H.G.
0.47 61.2 At2g42360 818837 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.44 57.2 At2g39200 818505 MLO12 (MILDEW RESISTANCE LOCUS O 12) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.41 52.4 At4g01700 828131 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF S.X. H.G.
0.40 50.8 At1g51790 841605 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
583.3 100.0 E-ATMX-33-raw-cel-1562596241
214.1 100.0 E-ATMX-33-raw-cel-1562596197
63.7 99.8 E-NASC-76-raw-cel-1359878900
60.3 99.8 E-ATMX-33-raw-cel-1562596103
57.0 99.8 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
56.5 99.8 E-NASC-76-raw-cel-1359879158
54.7 99.8 E-MEXP-1443-raw-cel-1581869632
54.2 99.8 GSM226541 L11SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
52.8 99.8 E-NASC-76-raw-cel-1359878976
50.7 99.8 GSM142835 MG001_ATH1_A13-Torres-4N1 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 3e-8 57 At2g38900 818474 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. C.G. S.X.
0.01 2e+0 32 At5g12430 831118 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding, binding;P:protein folding;C:chloroplast;BMOFPAV C.G. S.X.
0.02 2e+0 32 At5g65687 836697 transporter-related F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:plasma membrane, membrane;BFOMAP C.G. S.X.
0.01 2e+0 32 At4g30110 829134 HMA2 encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc C.G. S.X.
0.02 2e+0 32 At4g21760 828264 BGLU47 (Beta-glucosidase 47) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.01 6e+0 30 At5g37510 833729 EMB1467 (embryo defective 1467) Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte. C.G. S.X.
0.02 6e+0 30 At5g13840 831230 FZR3 (FIZZY-RELATED 3) F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-1 34 Glycine max Gma.12879.1.A1_at CD393964 - - 5e-1 At2g38870 protease inhibitor, putative C.G. S.X.
0.04 1e+1 28 Hordeum vulgare Contig25065_at Contig25065 - - 4e+0 At5g40981 unknown protein C.G. S.X.
0.05 3e+0 32 Oryza sativa OsAffx.26040.1.A1_at - - - 0 C.G. S.X.
0.07 2e+0 32 Populus trichocarpa PtpAffx.74197.1.A1_at BP933793 - - 2e+0 At2g38870 protease inhibitor, putative C.G. S.X.
0.07 1e-1 36 Triticum aestivum TaAffx.27855.1.S1_s_at CA669343 - - 3e+0 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.04 5e-1 32 Vitis vinifera 1621634_at CF568987 - - 1e-30 At5g62700 TUB3 C.G. S.X.
0.06 2e-1 34 Zea mays Zm.4099.2.S1_at AI770849 Hypothetical protein LOC100191159 - 8e-1 At2g38870 protease inhibitor, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
C GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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