Gene omics information

Query gene ID At2g38860
Gene name YLS5
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7385.5At2g38860818470YLS5Encodes protease I (pfpI)-like protein YLS5.S.X.H.G.
0.5773.8At3g54640824629TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).S.X.H.G.
0.4050.8At1g74100843750SOT16 (SULFOTRANSFERASE 16)encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with different desulfoglucosinolates, the best substrate is indole-3-methyl-dsGS, followed by benzyl-dsGS. Expression was induced by wounding, jasmonate and ethylene stimulates.S.X.H.G.
0.4050.8At4g31500829277CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1)Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates. Is required for phytochrome signal transduction in red light. Mutation confers auxin overproduction.S.X.H.G.
0.3338.1At1g24807839085anthranilate synthase beta subunit, putativeF:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
57.399.8GSM226552Slice10JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
54.999.8E-NASC-76-raw-cel-1359879158
47.199.8E-NASC-76-raw-cel-1359878976
40.399.8GSM131160AtGen_C-10_1-Pi-6_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
38.699.8E-NASC-76-raw-cel-1359878900
31.199.7GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
30.999.7GSM131161AtGen_C-11_2-Pi-6_REP2_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
30.899.7GSM131377AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
26.299.7GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
24.599.6GSM128719Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1GSE5525Transcriptome changes of Arabidopsis during pathogen and insect attack
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.451e-20101At3g54600824625DJ-1 family proteinF:unknown;P:unknown;C:endomembrane system;BOAPMFC.G.S.X.
0.024e-240At3g06270819801protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMOFBVAC.G.S.X.
0.011e-138Atmg00520--hypothetical proteinC.G.S.X.
0.011e-138At5g40340834032PWWP domain-containing proteinF:molecular_function unknown;P:unknown;C:nucleolus;MOFBPVAC.G.S.X.
0.021e-138At2g37860818362LCD1 (LOWER CELL DENSITY 1)Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringaeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-136Glycine maxGmaAffx.42464.1.S1_atBM893519--5e-2At4g17710HDG4 (HOMEODOMAIN GLABROUS 4)C.G.S.X.
0.024e+032Hordeum vulgareHVSMEh0081G18r2_atHVSMEh0081G18r2--1e+0At5g11340GCN5-related N-acetyltransferase (GNAT) family proteinC.G.S.X.
0.025e+034Oryza sativaOs10g03654009638.m01858--6e-1At5g25000unknown proteinC.G.S.X.
0.022e-138Populus trichocarpaPtpAffx.18484.1.A1_atCV245083hypothetical protein /// glutamate-gated kainate-type ion channel receptor subunit GluR5-2e-12At2g17265HSK (HOMOSERINE KINASE)C.G.S.X.
0.032e+034Triticum aestivumTaAffx.79761.1.S1_atCA708913--2e-1At5g25750unknown proteinC.G.S.X.
0.033e+032Vitis vinifera1608604_atBQ796866hypothetical protein LOC100260136-7e-24At3g0556060S ribosomal protein L22-2 (RPL22B)C.G.S.X.
0.024e+032Zea maysZm.9823.1.A1_atBM348998--4e-1At3g47990zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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