CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g38860

Gene name YLS5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At2g38860 818470 YLS5 Encodes protease I (pfpI)-like protein YLS5. S.X. H.G.
0.57 73.8 At3g54640 824629 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN) Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2). S.X. H.G.
0.40 50.8 At1g74100 843750 SOT16 (SULFOTRANSFERASE 16) encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with different desulfoglucosinolates, the best substrate is indole-3-methyl-dsGS, followed by benzyl-dsGS. Expression was induced by wounding, jasmonate and ethylene stimulates. S.X. H.G.
0.40 50.8 At4g31500 829277 CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1) Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates. Is required for phytochrome signal transduction in red light. Mutation confers auxin overproduction. S.X. H.G.
0.33 38.1 At1g24807 839085 anthranilate synthase beta subunit, putative F:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.3 99.8 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
54.9 99.8 E-NASC-76-raw-cel-1359879158
47.1 99.8 E-NASC-76-raw-cel-1359878976
40.3 99.8 GSM131160 AtGen_C-10_1-Pi-6_REP1_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
38.6 99.8 E-NASC-76-raw-cel-1359878900
31.1 99.7 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
30.9 99.7 GSM131161 AtGen_C-11_2-Pi-6_REP2_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
30.8 99.7 GSM131377 AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
26.2 99.7 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
24.5 99.6 GSM128719 Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.45 1e-20 101 At3g54600 824625 DJ-1 family protein F:unknown;P:unknown;C:endomembrane system;BOAPMF C.G. S.X.
0.02 4e-2 40 At3g06270 819801 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMOFBVA C.G. S.X.
0.01 1e-1 38 Atmg00520 - - hypothetical protein C.G. S.X.
0.01 1e-1 38 At5g40340 834032 PWWP domain-containing protein F:molecular_function unknown;P:unknown;C:nucleolus;MOFBPVA C.G. S.X.
0.02 1e-1 38 At2g37860 818362 LCD1 (LOWER CELL DENSITY 1) Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 36 Glycine max GmaAffx.42464.1.S1_at BM893519 - - 5e-2 At4g17710 HDG4 (HOMEODOMAIN GLABROUS 4) C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HVSMEh0081G18r2_at HVSMEh0081G18r2 - - 1e+0 At5g11340 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.02 5e+0 34 Oryza sativa Os10g0365400 9638.m01858 - - 6e-1 At5g25000 unknown protein C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.18484.1.A1_at CV245083 hypothetical protein /// glutamate-gated kainate-type ion channel receptor subunit GluR5 - 2e-12 At2g17265 HSK (HOMOSERINE KINASE) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.79761.1.S1_at CA708913 - - 2e-1 At5g25750 unknown protein C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1608604_at BQ796866 hypothetical protein LOC100260136 - 7e-24 At3g05560 60S ribosomal protein L22-2 (RPL22B) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.9823.1.A1_at BM348998 - - 4e-1 At3g47990 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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