CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g38500

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g38500 818432 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.71 84.2 At5g18910 832009 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:peroxisome;MPOBFVA S.X. H.G.
0.70 83.5 At2g24370 816973 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.63 78.1 At2g17890 816299 CPK16 member of Calcium Dependent Protein Kinase S.X. H.G.
0.57 73.8 At5g05070 830389 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.56 73.0 At3g02810 821236 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA S.X. H.G.
0.55 70.6 At5g39420 833938 cdc2cAt (Arabidopsis thaliana cdc2c) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVA S.X. H.G.
0.51 66.3 At4g27790 828892 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB S.X. H.G.
0.50 65.3 At1g13970 837957 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;POFM S.X. H.G.
0.50 65.3 At2g43230 818924 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
266.6 100.0 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
209.5 100.0 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
196.9 100.0 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
187.4 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
155.2 99.9 E-MEXP-1138-raw-cel-1432772522
145.7 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
138.1 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
131.6 99.9 E-MEXP-285-raw-cel-440782791
131.6 99.9 E-MEXP-1138-raw-cel-1432772586
128.8 99.9 E-MEXP-285-raw-cel-440782725
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-3 42 At5g22790 832342 RER1 (RETICULATA-RELATED 1) F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope;MOBPFVA C.G. S.X.
0.03 9e-3 42 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.01 3e-2 40 At3g07250 819913 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVB C.G. S.X.
0.01 1e-1 38 At5g48385 834893 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBF C.G. S.X.
0.02 1e-1 38 At5g46730 834716 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA C.G. S.X.
0.02 1e-1 38 At5g01370 831905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV C.G. S.X.
0.03 1e-1 38 At4g13850 827019 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Glycine max GmaAffx.34785.8.S1_s_at BG406465 - - 8e-2 At4g08370 proline-rich extensin-like family protein C.G. S.X.
0.03 3e-1 36 Hordeum vulgare HVSMEn0015C19r2_at HVSMEn0015C19r2 - - 7e-2 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.03 4e-3 44 Oryza sativa OsAffx.23193.1.S1_at - - - 0 C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.200211.1.S1_s_at pmrna397 hypothetical protein - 3e+0 At5g50470 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) C.G. S.X.
0.03 6e-1 36 Triticum aestivum TaAffx.23863.1.S1_at CA729345 - - 1e-2 At1g54215 proline-rich family protein C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1620121_at CK136939.1 - - 5e+0 Atmg00530 - C.G. S.X.
0.02 2e-1 36 Zea mays Zm.3756.1.A1_at BE025409 - - 8e-3 At2g24520 AHA5 (Arabidopsis H(+)-ATPase 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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