CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g38110

Gene name GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At2g38110 818389 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) Encodes a protein with glycerol-3-phosphate acyltransferase activity. S.X. H.G.
0.96 97.3 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. S.X. H.G.
0.93 96.4 At1g01600 839347 CYP86A4 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. S.X. H.G.
0.93 96.4 At5g55720 835666 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.83 91.4 At2g42990 818901 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.80 89.8 At2g04570 814999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.80 89.8 At5g33370 833315 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.79 89.1 At5g45960 834636 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.77 88.0 At1g12570 837814 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA S.X. H.G.
0.77 88.0 At1g58430 842212 RXF26 Encodes an anther-specific proline-rich protein. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
226.5 100.0 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
211.5 100.0 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
209.7 100.0 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
169.0 100.0 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
166.3 100.0 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
156.0 99.9 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
146.9 99.9 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
106.5 99.9 GSM106914 opr3_JA_8 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
97.5 99.9 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
68.7 99.9 GSM106913 opr3_JA_8 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-9 63 At1g01610 839297 GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4) Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8. C.G. S.X.
0.05 2e-7 57 At3g11430 820316 GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5) Encodes a protein with glycerol-3-phosphate acyltransferase activity, involved in the biosynthesis of suberin polyester. C.G. S.X.
0.02 5e-2 40 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.02 5e-2 40 At4g00400 828140 GPAT8 (glycerol-3-phosphate acyltransferase 8) Involved in cutin assembly. Is functional redundant of GPAT4. C.G. S.X.
0.02 2e-1 38 At2g04190 814956 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;BMOPFVA C.G. S.X.
0.01 7e-1 36 At4g32140 829346 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;OBMFPA C.G. S.X.
0.01 3e+0 34 At5g17030 831566 UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3) F:quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF C.G. S.X.
0.01 3e+0 34 At5g41130 834115 acyltransferase/ catalytic F:catalytic activity, acyltransferase activity;P:metabolic process;C:cellular_component unknown;BPOM C.G. S.X.
0.01 3e+0 34 At3g57350 824902 - F:molecular_function unknown;P:transport;C:nuclear pore;MFPBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-3 44 Glycine max GmaAffx.81029.1.A1_at BE658920 - - 3e+0 At3g45242 CPuORF61 (Conserved peptide upstream open reading frame 61) C.G. S.X.
0.09 4e-10 65 Hordeum vulgare Contig6715_at Contig6715 - - 4e-10 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) C.G. S.X.
0.13 5e-28 127 Oryza sativa Os01g0855000 AK070880.1 - Phospholipid/glycerol acyltransferase familyprotein 6e-28 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) C.G. S.X.
0.17 8e-11 69 Populus trichocarpa Ptp.7578.1.A1_s_at CV237629 hypothetical protein - 3e-11 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) C.G. S.X.
0.13 4e-15 83 Triticum aestivum Ta.6416.1.S1_at CK154083 - - 5e-15 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) C.G. S.X.
0.14 1e-3 44 Vitis vinifera 1612479_at CF415448 hypothetical protein LOC100243093 - 1e-8 At1g01610 GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4) C.G. S.X.
0.17 1e-19 97 Zea mays Zm.8822.1.A1_at AY105347.1 glycerol-3-phosphate acyltransferase 8 - 3e-19 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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