CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g37940

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g37940 818371 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOP S.X. H.G.
0.75 86.9 At3g11820 820355 SYP121 (SYNTAXIN OF PLANTS 121) Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance. S.X. H.G.
0.75 86.9 At5g61210 836242 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation S.X. H.G.
0.67 81.6 At1g22280 838835 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, plasma membrane;PMOBFVA S.X. H.G.
0.67 81.6 At3g12740 820456 ALIS1 (ALA-INTERACTING SUBUNIT 1) Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.3 99.8 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
38.2 99.8 E-NASC-76-raw-cel-1359878951
32.8 99.7 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
30.0 99.7 GSM322555 genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
27.0 99.7 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
26.0 99.7 GSM322556 genotype: ataf1-1 mutant, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 22 factorial design
26.0 99.7 GSM39204 Col_Chitin2 GSE2169 rre1 and rre2 mutants
25.8 99.7 E-NASC-76-raw-cel-1359879132
24.3 99.6 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
23.7 99.6 GSM39195 RRE1_Chitin1 GSE2169 rre1 and rre2 mutants
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 753 At3g54020 824569 phosphatidic acid phosphatase-related / PAP2-related F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOP C.G. S.X.
0.12 5e-4 46 At2g29525 817501 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPB C.G. S.X.
0.03 5e-1 36 At3g44590 823584 60S acidic ribosomal protein P2 (RPP2D) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA C.G. S.X.
0.01 5e-1 36 At3g53840 824551 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 2e+0 34 At5g63170 836438 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM C.G. S.X.
0.01 2e+0 34 At5g61350 836256 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-19 97 Glycine max Gma.7768.2.S1_at BM891062 - - 1e-19 At2g37940 - C.G. S.X.
0.04 4e-6 52 Hordeum vulgare Contig20371_at Contig20371 - - 9e-6 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.20 6e-11 69 Oryza sativa Os05g0287800 AK071727.1 - Conserved hypothetical protein 7e-11 At2g37940 - C.G. S.X.
0.40 5e-17 89 Populus trichocarpa Ptp.3736.1.A1_at CV256427 hypothetical protein - 3e-24 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.05 1e-1 38 Triticum aestivum Ta.9266.2.S1_at CA637287 - - 2e-3 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.32 1e-26 119 Vitis vinifera 1621632_at BQ794172 hypothetical protein LOC100266611 - 9e-28 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.14 4e-12 71 Zea mays Zm.17912.1.S1_at BU050922 hypothetical protein LOC100273314 - 6e-7 At3g54020 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage