Gene omics information

Query gene ID At2g37860
Gene name LCD1 (LOWER CELL DENSITY 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g37860818362LCD1 (LOWER CELL DENSITY 1)Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringaeS.X.H.G.
0.6982.9At2g37500818326arginine biosynthesis protein ArgJ familyF:glutamate N-acetyltransferase activity;P:arginine biosynthetic process;C:chloroplast;OBFAPS.X.H.G.
0.6176.7At5g10920830959argininosuccinate lyase, putative / arginosuccinase, putativeF:argininosuccinate lyase activity, catalytic activity;P:arginine biosynthetic process via ornithine, arginine biosynthetic process;C:chloroplast, chloroplast stroma;BOAMFPS.X.H.G.
0.5065.3At3g27740822396CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)carbamoyl phosphate synthetase small subunit mRNA (carA),S.X.H.G.
0.5065.3At3g57610824930ADSS (ADENYLOSUCCINATE SYNTHASE)encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate)S.X.H.G.
0.4355.3At3g14390820660diaminopimelate decarboxylase, putative / DAP carboxylase, putativeF:diaminopimelate decarboxylase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;BOMPFAVS.X.H.G.
0.4050.8At5g47320834779RPS19 (RIBOSOMAL PROTEIN S19)Nuclear encoded mitochondrial ribosome subunit.S.X.H.G.
0.3643.6At5g63890836509ATHDH (HISTIDINOL DEHYDROGENASE)Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.S.X.H.G.
0.3338.1At3g16480820896MPPalpha (mitochondrial processing peptidase alpha subunit)F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 8 components;BOMFPAVS.X.H.G.
0.3235.7At4g26300828736emb1027 (embryo defective 1027)F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPVS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
18.399.5GSM133975Birnbaum_1-5_StageI-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
11.099.2GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.499.2GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.299.2GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.499.1GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
9.099.1GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
8.799.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.699.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.599.0GSM133974Birnbaum_1-4_StageI-1_Rep1_ATH1GSE5749A gene expression map of the Arabidopsis root
8.499.0GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.272e-22107At5g22790832342RER1 (RETICULATA-RELATED 1)F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope;MOBPFVAC.G.S.X.
0.033e-240At1g61750842472-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOBFVAC.G.S.X.
0.031e-138At5g38440833832self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.021e-138At3g44110823531ATJ3homologous to the co-chaperon DNAJ protein from E coliC.G.S.X.
0.021e-138At2g38860818470YLS5Encodes protease I (pfpI)-like protein YLS5.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.256e-2099Glycine maxGmaAffx.19024.1.S1_atCD399607--4e-20At2g37860LCD1 (LOWER CELL DENSITY 1)C.G.S.X.
0.074e-961Hordeum vulgareContig11317_atContig11317--3e-9At2g37860LCD1 (LOWER CELL DENSITY 1)C.G.S.X.
0.145e-963Oryza sativaOs04g0524400AK103349.1-Conserved hypothetical protein1e-12At5g22790RER1 (RETICULATA-RELATED 1)C.G.S.X.
0.299e-53208Populus trichocarpaPtpAffx.110813.1.A1_atCA923423hypothetical protein-6e-53At2g37860LCD1 (LOWER CELL DENSITY 1)C.G.S.X.
0.099e-961Triticum aestivumTa.25456.1.S1_atBJ226883--1e-8At2g37860LCD1 (LOWER CELL DENSITY 1)C.G.S.X.
0.022e-136Vitis vinifera1609147_atCB979150hypothetical protein LOC100256452-3e-15At1g04410malate dehydrogenase, cytosolic, putativeC.G.S.X.
0.102e-1789Zea maysZm.19310.1.S1_atBM078335hypothetical protein LOC100277077-1e-11At5g22790RER1 (RETICULATA-RELATED 1)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048366The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage