CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g37520

Gene name PHD finger family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g37520 818328 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO S.X. H.G.
0.36 43.6 At1g30090 839888 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPBOAV S.X. H.G.
0.35 41.6 At4g26980 828806 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.35 41.6 At2g40810 818678 AtATG18c F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.33 38.1 At5g15710 831425 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.31 33.8 At3g07930 819984 HhH-GPD base excision DNA repair family protein F:unknown;P:base-excision repair;C:unknown;MPO S.X. H.G.
0.18 11.4 At1g27630 839655 CYCT1 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MFPO S.X. H.G.
0.09 2.8 At5g13160 831155 PBS1 (avrPphB susceptible 1) Mutant is defective in perception of Pseudomonas syringae avirulence gene avrPphB. Encodes a putative serine-threonine kinase. S.X. H.G.
0.09 2.8 At3g19770 821514 VPS9A Guanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development. S.X. H.G.
0.04 0.9 At5g64730 836594 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
158.5 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
93.5 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
91.1 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
74.9 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
62.4 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
59.7 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.0 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.7 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.8 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.2 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 0 674 At3g53680 824535 PHD finger transcription factor, putative F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO C.G. S.X.
0.02 8e-2 40 At5g13660 831211 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e-1 38 At5g20520 832174 WAV2 (WAVY GROWTH 2) Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch). C.G. S.X.
0.01 3e-1 38 At2g33000 817862 ubiquitin-associated (UBA)/TS-N domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 3e-1 38 At1g68460 843175 ATIPT1 (isopentenyltransferase 1) Encodes a putative adenylate isopentenyltransferase which catalyzes the formation of isopentenyladenosine 5'-monophosphate (iPMP) from AMP and dimethylallylpyrophosphate (DMAPP). Involved in cytokinin biosynthesis. C.G. S.X.
0.01 1e+0 36 At5g37460 833723 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOM C.G. S.X.
0.01 1e+0 36 At5g36670 833632 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOPFBV C.G. S.X.
0.01 1e+0 36 At5g36740 833643 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOPFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-26 121 Glycine max GmaAffx.4240.1.S1_at BE820682 - - 1e-26 At2g37520 PHD finger family protein C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig17611_at Contig17611 - - 2e+0 At3g03950 protein binding C.G. S.X.
0.01 1e-5 54 Oryza sativa Os06g0101000 AK122124.1 - Hypothetical protein 8e-6 At2g37520 PHD finger family protein C.G. S.X.
0.06 1e-29 133 Populus trichocarpa PtpAffx.53264.3.S1_a_at CV258546 - - 2e-30 At2g37520 PHD finger family protein C.G. S.X.
0.01 5e+0 34 Triticum aestivum TaAffx.38119.1.S1_at BJ249191 - - 1e+0 At2g45800 LIM domain-containing protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1611862_at CF568968 - - 3e-4 At1g08350 endomembrane protein 70 family protein C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.877.1.A1_at AI770795 - - 8e-1 At5g16240 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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