CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g37410

Gene name ATTIM17-2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At2g37410 818317 ATTIM17-2 Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway. S.X. H.G.
0.67 81.6 At1g17530 838327 ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) Encodes a translocase of inner mitochondrial membrane. S.X. H.G.
0.67 81.6 At5g42820 834293 U2AF35B U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. S.X. H.G.
0.31 33.8 At2g37340 818311 RSZ33 encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. S.X. H.G.
0.29 30.3 At3g25910 822188 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;MPOFBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.9 99.7 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
18.0 99.5 GSM133118 RIKEN-YAMAUCHI1B GSE5687 AtGenExpress: Different temperature treatment of seeds
16.9 99.5 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
16.6 99.5 GSM142652 MC002_ATH1_A10.3-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.3 99.5 GSM142650 MC002_ATH1_A10.1-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
16.3 99.5 GSM142594 DB001_ATH1_A4-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
15.8 99.5 GSM142593 DB001_ATH1_A3-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
15.7 99.5 GSM142651 MC002_ATH1_A10.2-dubos-wth GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
14.7 99.4 GSM142628 MC002_ATH1_A2.3-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.9 99.4 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 6e-6 52 At5g11690 831041 ATTIM17-3 mitochondrial inner membrane translocase C.G. S.X.
0.04 6e-3 42 At1g20350 838623 ATTIM17-1 mitochondrial inner membrane translocase C.G. S.X.
0.02 9e-2 38 At2g37320 818309 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFB C.G. S.X.
0.02 4e-1 36 At5g38340 833816 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PMBOFAV C.G. S.X.
0.01 4e-1 36 At5g57870 835897 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative F:protein binding, RNA binding, binding, translation initiation factor activity;P:translational initiation, translation, RNA metabolic process;C:nucleus, cytoplasm;MPOFB C.G. S.X.
0.01 4e-1 36 At2g20050 816524 ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase F:cAMP-dependent protein kinase regulator activity, protein kinase activity, protein serine/threonine phosphatase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation, protein amino acid dephosphorylation, N-terminal protein myristoylation, regulation of protein amino acid phosphorylation;C:plasma membrane;MOPFBVA C.G. S.X.
0.02 4e-1 36 At1g16370 838207 OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-3 44 Glycine max GmaAffx.9037.2.S1_at BE657653 - - 2e-3 At2g37410 ATTIM17-2 C.G. S.X.
0.04 3e+0 32 Hordeum vulgare Contig20070_at Contig20070 - - 2e-4 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.4610.1.A1_at - - - 0 C.G. S.X.
0.29 4e-11 69 Populus trichocarpa PtpAffx.12848.1.S1_at DN484571 hypothetical protein - 3e-11 At2g37410 ATTIM17-2 C.G. S.X.
0.03 6e-3 42 Triticum aestivum Ta.26390.1.A1_at CD490620 - - 3e-1 At5g42591 unknown protein C.G. S.X.
0.04 3e-5 48 Vitis vinifera 1621567_at BQ793310 hypothetical protein LOC100259466 - 1e-4 At2g37410 ATTIM17-2 C.G. S.X.
0.05 2e-1 36 Zea mays Zm.13937.1.S1_at AY108141.1 mitochondrial import inner membrane translocase subunit Tim17 - 6e-1 At2g37410 ATTIM17-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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