CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g37300

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At2g37300 818307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OFPMB S.X. H.G.
0.44 57.2 At4g39510 830105 CYP96A12 member of CYP96A S.X. H.G.
0.13 5.8 At5g51750 835249 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAM S.X. H.G.
0.13 5.8 At3g13510 820553 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB S.X. H.G.
0.11 4.1 At3g18960 821429 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.2 99.8 GSM142661 MB002_ATH1_A1-Eland-ch1 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
43.0 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.6 99.8 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.3 99.8 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
39.0 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.3 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.5 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.9 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.2 99.7 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
32.2 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-2 40 At3g06020 819773 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBA C.G. S.X.
0.01 1e-2 40 At3g55020 824668 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVA C.G. S.X.
0.05 1e-2 40 At2g33810 817948 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. C.G. S.X.
0.05 1e-2 40 At2g03230 814852 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.05 5e-2 38 At5g26720 832717 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e-2 38 At3g56150 824781 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) member of eIF3c - eukaryotic initiation factor 3c C.G. S.X.
0.02 5e-2 38 At2g23150 816847 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. C.G. S.X.
0.02 5e-2 38 At2g47000 819314 ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-1 36 Glycine max HgAffx.1779.1.S1_at CK350911 - - 7e-4 At2g33810 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) C.G. S.X.
0.05 9e-2 36 Hordeum vulgare Contig24783_at Contig24783 - - 3e-2 At5g15460 MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2) C.G. S.X.
0.04 9e-2 38 Oryza sativa Os03g0390600 AF467728.1 - Histone H3.3 5e-105 At4g40040 histone H3.2 C.G. S.X.
0.05 7e-2 38 Populus trichocarpa PtpAffx.28819.1.S1_at BU812020 hypothetical protein - 5e-2 At2g37300 unknown protein C.G. S.X.
0.06 1e-2 40 Triticum aestivum Ta.12764.1.A1_at BQ161775 - - 2e+0 At3g53402 CPuORF46 (Conserved peptide upstream open reading frame 46) C.G. S.X.
0.05 6e-2 36 Vitis vinifera 1609393_at CF404605 hypothetical protein LOC100251055 - 2e-1 At2g37300 unknown protein C.G. S.X.
0.03 3e-1 34 Zea mays Zm.17320.1.A1_at CK348081 hypothetical protein LOC100277232 - 5e-3 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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