CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g37260

Gene name TTG2 (TRANSPARENT TESTA GLABRA 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g37260 818303 TTG2 (TRANSPARENT TESTA GLABRA 2) Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent. S.X. H.G.
0.80 89.8 At3g13540 820556 ATMYB5 (MYB DOMAIN PROTEIN 5) Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches). S.X. H.G.
0.67 81.6 At1g20550 838643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.53 68.6 At3g09710 820128 IQD1 (IQ-DOMAIN 1) Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue. S.X. H.G.
0.50 65.3 At3g07980 819989 MAPKKK6 MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
414.6 100.0 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
235.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
229.5 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
214.9 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
204.6 100.0 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
201.6 100.0 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
194.5 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
181.4 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
168.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
166.8 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 3e-24 113 At5g56270 835726 WRKY2 WRKY transcription factor 2 C.G. S.X.
0.05 1e-17 91 At4g26440 828750 WRKY34 (WRKY DNA-BINDING PROTEIN 34) member of WRKY Transcription Factor; Group I C.G. S.X.
0.06 2e-10 67 At3g01080 821213 WRKY58 member of WRKY Transcription Factor; Group I C.G. S.X.
0.04 4e-8 59 At2g03340 814863 WRKY3 Encodes WRKY DNA-binding protein 3 (WRKY3). C.G. S.X.
0.09 4e-5 50 At2g38470 818429 WRKY33 Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. C.G. S.X.
0.05 2e-4 48 At2g04880 815035 ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1) Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. C.G. S.X.
0.02 7e-4 46 At3g09880 820146 ATB' BETA Encodes B' regulatory subunit of PP2A (AtB'beta). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-6 56 Glycine max GmaAffx.6438.7.S1_at BE800712 WRKY19 (WRKY19) - 2e-7 At2g37260 TTG2 (TRANSPARENT TESTA GLABRA 2) C.G. S.X.
0.04 5e-3 42 Hordeum vulgare Contig12033_at Contig12033 - - 1e-11 At1g13960 WRKY4 C.G. S.X.
0.05 1e-3 46 Oryza sativa Os12g0102300 AY341860.1 - WRKY transcription factor 57 3e-3 At5g07100 WRKY26 C.G. S.X.
0.09 1e-18 95 Populus trichocarpa PtpAffx.209136.1.S1_at pmrna18087 hypothetical protein - 6e-33 At1g13960 WRKY4 C.G. S.X.
0.08 8e-16 85 Triticum aestivum Ta.29394.1.S1_at CK207466 - - 4e-16 At2g37260 TTG2 (TRANSPARENT TESTA GLABRA 2) C.G. S.X.
0.06 2e-4 46 Vitis vinifera 1620383_at CD715703 - - 2e-21 At1g29860 WRKY71 C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.795.1.A1_at AI770340 - - 3e-3 At5g46350 WRKY8 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009957 The process by which a cell becomes capable of differentiating autonomously into an epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.
X GO:0010214 The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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