Gene omics information

Query gene ID At2g37260
Gene name TTG2 (TRANSPARENT TESTA GLABRA 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g37260818303TTG2 (TRANSPARENT TESTA GLABRA 2)Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent.S.X.H.G.
0.8089.8At3g13540820556ATMYB5 (MYB DOMAIN PROTEIN 5)Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).S.X.H.G.
0.6781.6At1g20550838643unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
0.5368.6At3g09710820128IQD1 (IQ-DOMAIN 1)Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue.S.X.H.G.
0.5065.3At3g07980819989MAPKKK6MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
414.6100.0GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
235.8100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
229.5100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
214.9100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
204.6100.0GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
201.6100.0GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
194.5100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
181.4100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
168.1100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
166.8100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.083e-24113At5g56270835726WRKY2WRKY transcription factor 2C.G.S.X.
0.051e-1791At4g26440828750WRKY34 (WRKY DNA-BINDING PROTEIN 34)member of WRKY Transcription Factor; Group IC.G.S.X.
0.062e-1067At3g01080821213WRKY58member of WRKY Transcription Factor; Group IC.G.S.X.
0.044e-859At2g03340814863WRKY3Encodes WRKY DNA-binding protein 3 (WRKY3).C.G.S.X.
0.094e-550At2g38470818429WRKY33Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.C.G.S.X.
0.052e-448At2g04880815035ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic acid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1.C.G.S.X.
0.027e-446At3g09880820146ATB' BETAEncodes B' regulatory subunit of PP2A (AtB'beta).C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-656Glycine maxGmaAffx.6438.7.S1_atBE800712WRKY19 (WRKY19)-2e-7At2g37260TTG2 (TRANSPARENT TESTA GLABRA 2)C.G.S.X.
0.045e-342Hordeum vulgareContig12033_atContig12033--1e-11At1g13960WRKY4C.G.S.X.
0.051e-346Oryza sativaOs12g0102300AY341860.1-WRKY transcription factor 573e-3At5g07100WRKY26C.G.S.X.
0.091e-1895Populus trichocarpaPtpAffx.209136.1.S1_atpmrna18087hypothetical protein-6e-33At1g13960WRKY4C.G.S.X.
0.088e-1685Triticum aestivumTa.29394.1.S1_atCK207466--4e-16At2g37260TTG2 (TRANSPARENT TESTA GLABRA 2)C.G.S.X.
0.062e-446Vitis vinifera1620383_atCD715703--2e-21At1g29860WRKY71C.G.S.X.
0.021e+034Zea maysZmAffx.795.1.A1_atAI770340--3e-3At5g46350WRKY8C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009957The process by which a cell becomes capable of differentiating autonomously into an epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.
XGO:0010214The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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