CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g37060

Gene name NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.81 90.4 At2g37060 818282 NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO S.X. H.G.
0.82 90.9 At3g03970 819552 binding F:binding;P:spliceosome assembly, nuclear mRNA splicing, via spliceosome;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At1g05380 837039 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFAB S.X. H.G.
0.78 88.6 At5g02910 831746 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.77 88.0 At2g44660 819074 transferase, transferring glycosyl groups / transferase, transferring hexosyl groups F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum membrane;MFOPB S.X. H.G.
0.75 86.9 At2g26470 817188 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFAPV S.X. H.G.
0.74 86.1 At5g64930 836617 CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5) Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR). S.X. H.G.
0.74 86.1 At1g17040 838274 SHA (SH2 DOMAIN PROTEIN A) Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor. S.X. H.G.
0.71 84.2 At1g47490 841157 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) F:RNA binding;P:unknown;C:unknown;MPFOBVA S.X. H.G.
0.71 84.2 At3g58800 825049 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PVO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
228.4 100.0 E-ATMX-35-raw-cel-1574334832
181.9 100.0 E-ATMX-35-raw-cel-1574334800
93.7 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.0 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
82.1 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
79.5 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
77.0 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.6 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
72.0 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
70.1 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 2e-116 418 At3g53340 824502 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:intracellular, nucleus;MPFO C.G. S.X.
0.38 9e-32 137 At2g38880 818472 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 3e-17 89 Glycine max Gma.1955.3.S1_at CD402631 - - 4e-17 At2g37060 NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8) C.G. S.X.
0.03 5e-1 34 Hordeum vulgare Contig1337_s_at Contig1337 - - 1e+0 At2g37060 NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8) C.G. S.X.
0.19 2e-6 54 Oryza sativa Os05g0463800 AK100811.1 - CCAAT-binding transcription factor-like protein(Fragment) 2e-16 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) C.G. S.X.
0.32 2e-33 143 Populus trichocarpa PtpAffx.69785.2.A1_a_at CV243355 hypothetical protein - 3e-32 At2g38880 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.85950.2.S1_at CA661564 - - 9e-3 At3g10380 SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1620805_at CB344295 - - 1e-21 Atcg00650 - C.G. S.X.
0.21 1e-10 65 Zea mays Zm.10383.4.S1_a_at AY106957.1 transcription factor subunit NF-YB2 /// hypothetical protein LOC100273424 /// CAAT-box DNA binding protein subunit B (NF-YB) - 3e-12 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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