Gene omics information

Query gene ID At2g37020
Gene name DNA binding / sequence-specific DNA binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1811.4At2g37020818276DNA binding / sequence-specific DNA bindingF:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:chloroplast;MFOPAS.X.H.G.
0.4761.2At3g44490823574hda17 (histone deacetylase 17)F:histone deacetylase activity;P:histone deacetylation;C:nucleus;MFOPS.X.H.G.
0.4253.9At4g18465827579RNA helicase, putativeF:RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BMOFVPAS.X.H.G.
0.157.8At5g10910830958mraW methylase family proteinF:methyltransferase activity;P:unknown;C:unknown;BOMPS.X.H.G.
0.146.8At3g56820824849unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
332.7100.0GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
145.699.9GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
65.099.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
45.699.8GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.199.7GSM133771Lindsey_1-23_torpedo-apical_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.499.6GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.099.6E-MEXP-849-raw-cel-1181981006
19.899.6E-MEXP-849-raw-cel-1181980982
19.199.6E-MEXP-849-raw-cel-1181981030
17.699.5GSM133769Lindsey_1-21_torpedo-basal_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-138At4g27330828841SPL (SPOROCYTELESS)Encodes a putative transcription factor that is required for the initiation of both micro- and megagametogenesis and is expressed in the sporogenous tissue of the anther and the ovule. SPL is a chalaza identity gene that share overlapping functions in establishing the prospective chalaza of the ovule. It also plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes in the ovule and generally interacts with YABBY proteins in vitro. Mutant is defective in the differentiation of primary sporogenous cells into microsporocytes, and does not properly form the anther wall. Regulator of anther cell differenctiationC.G.S.X.
0.035e-136At5g08060830700unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POC.G.S.X.
0.005e-136At3g02260820398BIG (BIG)Calossin-like protein required for polar auxin transportC.G.S.X.
0.025e-136At3g11180820289oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMC.G.S.X.
0.025e-136At2g36640818236ATECP63 (EMBRYONIC CELL PROTEIN 63)Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.C.G.S.X.
0.045e-136At1g28480839748GRX480Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk.C.G.S.X.
0.012e+034At5g54280835516ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)Type VII myosin geneC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.238e-1375Glycine maxGma.13055.1.A1_atCD412544--5e-13At2g37020DNA binding / sequence-specific DNA bindingC.G.S.X.
0.092e-446Hordeum vulgareContig11061_atContig11061--6e-4At2g37020DNA binding / sequence-specific DNA bindingC.G.S.X.
0.104e-963Oryza sativaOs10g0443200AK063397.1-The start codon is not identified.3e-9At2g37020DNA binding / sequence-specific DNA bindingC.G.S.X.
0.304e-42173Populus trichocarpaPtpAffx.150823.1.S1_atCF237230hypothetical protein-3e-42At2g37020DNA binding / sequence-specific DNA bindingC.G.S.X.
0.031e-138Triticum aestivumTa.6761.1.S1_atCA651825--2e-1At2g37020DNA binding / sequence-specific DNA bindingC.G.S.X.
0.031e-136Vitis vinifera1620420_atBQ792058hypothetical protein LOC100258367-1e-6At1g10830sodium symporter-relatedC.G.S.X.
0.021e+130Zea maysZmAffx.998.1.A1_atAI861421hypothetical protein LOC100272887-7e-1At4g00430PIP1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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