Gene omics information

Query gene ID At2g36990
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At2g36990818273SIGF (RNA POLYMERASE SIGMA-SUBUNIT F)Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons.S.X.H.G.
1.00100.0At2g21195816656unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PS.X.H.G.
1.00100.0At3g06790819864plastid developmental protein DAG, putativeF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
1.00100.0At5g18570831975GTP1/OBG family proteinF:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPVS.X.H.G.
0.9797.6At1g15080838072LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.S.X.H.G.
0.9797.6At3g62330825406zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.9797.6At4g01570828133pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBAS.X.H.G.
0.9797.6At5g32450833204RNA recognition motif (RRM)-containing proteinF:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFMOS.X.H.G.
0.9496.7At1g07970837312unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOBS.X.H.G.
0.9496.7At2g20740816603-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;POS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
777.2100.0GSM133757Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.399.3GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
6.998.7GSM318627Apex_BLS>>TCP4_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At1g55020841944LOX1lipoxygenase, a defense gene conferring resistance Xanthomonas campestrisC.G.S.X.
0.018e-136At5g41140834116unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.018e-136At3g07940819985zinc finger and C2 domain protein, putativeF:ARF GTPase activator activity, zinc ion binding;P:regulation of ARF GTPase activity;C:cellular_component unknown;MPFOC.G.S.X.
0.013e+034At5g61060836227HDA05 (HISTONE DEACETYLASE 5)Encodes a member of the histone deacetylase family.C.G.S.X.
0.003e+034At5g24350832505-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBC.G.S.X.
0.013e+034At5g62580836379bindingF:binding;P:biological_process unknown;C:cellular_component unknown;POBMC.G.S.X.
0.013e+034At5g19630832083unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BOPAFC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.075e-344Glycine maxGmaAffx.69339.3.S1_atBQ272709--1e-3At2g36990SIGF (RNA POLYMERASE SIGMA-SUBUNIT F)C.G.S.X.
0.021e-138Hordeum vulgareContig217_atContig217--7e-31At3g52300ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)C.G.S.X.
0.022e+036Oryza sativaOsAffx.31294.1.S1_at---0C.G.S.X.
0.093e-757Populus trichocarpaPtpAffx.17540.4.S1_atCX168071--1e-7At2g36990SIGF (RNA POLYMERASE SIGMA-SUBUNIT F)C.G.S.X.
0.023e+034Triticum aestivumTaAffx.80631.1.S1_atCA694604--9e-1At2g39520unknown proteinC.G.S.X.
0.021e+034Vitis vinifera1619749_atCF513129--1e+0At5g17550PEX19-2C.G.S.X.
0.016e+032Zea maysZm.19181.2.S1_a_atCF634947--4e-3At3g56900aladin-related / adracalin-relatedC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0045941Any process that activates or increases the frequency, rate or extent of transcription.
SGO:0006352Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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