CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g36990

Gene name SIGF (RNA POLYMERASE SIGMA-SUBUNIT F)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g36990 818273 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. S.X. H.G.
1.00 100.0 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At3g06790 819864 plastid developmental protein DAG, putative F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
1.00 100.0 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV S.X. H.G.
0.97 97.6 At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. S.X. H.G.
0.97 97.6 At3g62330 825406 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.97 97.6 At4g01570 828133 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA S.X. H.G.
0.97 97.6 At5g32450 833204 RNA recognition motif (RRM)-containing protein F:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFMO S.X. H.G.
0.94 96.7 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB S.X. H.G.
0.94 96.7 At2g20740 816603 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
777.2 100.0 GSM133757 Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.3 99.3 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.3 99.0 E-ATMX-35-raw-cel-1574334912
8.3 99.0 E-ATMX-35-raw-cel-1574334928
8.2 99.0 E-ATMX-33-raw-cel-1562596310
7.0 98.7 E-ATMX-33-raw-cel-1562596264
6.9 98.7 GSM318627 Apex_BLS>>TCP4_14DAS_2 GSE12691 Knockdown and overexpression of CIN-TCP genes
6.6 98.7 GSM183516 MYB51_OE_rep1 GSE7570 ATR1_like_Clade_OE_and_miR
6.5 98.6 GSM183514 MYB29_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
6.1 98.5 GSM183512 MYB76_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At1g55020 841944 LOX1 lipoxygenase, a defense gene conferring resistance Xanthomonas campestris C.G. S.X.
0.01 8e-1 36 At5g41140 834116 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 8e-1 36 At4g15470 827218 - F:unknown;P:unknown;C:unknown;BOMPFV C.G. S.X.
0.01 8e-1 36 At3g07940 819985 zinc finger and C2 domain protein, putative F:ARF GTPase activator activity, zinc ion binding;P:regulation of ARF GTPase activity;C:cellular_component unknown;MPFO C.G. S.X.
0.01 3e+0 34 At5g61060 836227 HDA05 (HISTONE DEACETYLASE 5) Encodes a member of the histone deacetylase family. C.G. S.X.
0.00 3e+0 34 At5g24350 832505 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.01 3e+0 34 At5g62580 836379 binding F:binding;P:biological_process unknown;C:cellular_component unknown;POBM C.G. S.X.
0.01 3e+0 34 At5g19630 832083 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-3 44 Glycine max GmaAffx.69339.3.S1_at BQ272709 - - 1e-3 At2g36990 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig217_at Contig217 - - 7e-31 At3g52300 ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL) C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.31294.1.S1_at - - - 0 C.G. S.X.
0.09 3e-7 57 Populus trichocarpa PtpAffx.17540.4.S1_at CX168071 - - 1e-7 At2g36990 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.80631.1.S1_at CA694604 - - 9e-1 At2g39520 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1619749_at CF513129 - - 1e+0 At5g17550 PEX19-2 C.G. S.X.
0.01 6e+0 32 Zea mays Zm.19181.2.S1_a_at CF634947 - - 4e-3 At3g56900 aladin-related / adracalin-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0045941 Any process that activates or increases the frequency, rate or extent of transcription.
S GO:0006352 Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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