CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g36870

Gene name xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g36870 818259 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOA S.X. H.G.
0.25 22.6 At3g54900 824655 CXIP1 (CAX INTERACTING PROTEIN 1) A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses. S.X. H.G.
0.24 20.7 At4g11175 826719 translation initiation factor IF-1, chloroplast, putative F:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOP S.X. H.G.
0.23 19.3 At5g08050 830699 - F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO S.X. H.G.
0.23 19.3 At3g59400 825109 GUN4 GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis. S.X. H.G.
0.23 19.3 At1g74730 843812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO S.X. H.G.
0.22 17.5 At4g34190 829567 SEP1 (STRESS ENHANCED PROTEIN 1) Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding. S.X. H.G.
0.22 17.5 At4g13220 826938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.21 15.8 At1g50900 841512 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO S.X. H.G.
0.21 15.8 At2g34460 818009 flavin reductase-related F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOPMFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.2 99.8 E-MEXP-265-raw-cel-414618394
44.6 99.8 E-MEXP-265-raw-cel-414618491
34.0 99.7 E-MEXP-265-raw-cel-414618693
29.8 99.7 E-MEXP-265-raw-cel-414618291
29.7 99.7 E-MEXP-265-raw-cel-414618796
25.8 99.7 GSM38669 NSPS GSE2268 Arabidopsis polysome microarray
23.6 99.6 GSM131170 AtGen_D-2_1-FL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
23.0 99.6 E-MEXP-265-raw-cel-414619001
21.9 99.6 E-MEXP-265-raw-cel-414618585
21.5 99.6 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 1e-4 48 At3g44990 823634 XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8) xyloglucan endo-transglycosylase C.G. S.X.
0.03 1e-1 38 At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli C.G. S.X.
0.01 4e-1 36 Atmg01360 - - cytochrome c oxidase subunit 1 C.G. S.X.
0.02 4e-1 36 At4g14880 827145 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. C.G. S.X.
0.01 4e-1 36 At3g59210 825090 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 4e-1 36 At3g48580 824018 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA C.G. S.X.
0.03 4e-1 36 At2g01850 814716 EXGT-A3 EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves. C.G. S.X.
0.01 4e-1 36 At1g02390 839558 GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2) Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 6e-69 262 Glycine max GmaAffx.3369.1.S1_at BU548983 - - 6e-69 At2g36870 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEn0024A10r2_at HVSMEn0024A10r2 - - 4e+0 At2g18660 EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) C.G. S.X.
0.03 4e+0 34 Oryza sativa OsAffx.533.1.S1_at - - - 0 C.G. S.X.
0.37 3e-46 186 Populus trichocarpa PtpAffx.111.1.A1_at CV265525 hypothetical protein - 3e-46 At2g36870 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.7371.1.S1_at CA660740 - - 4e-6 At2g28305 unknown protein C.G. S.X.
0.11 2e-10 65 Vitis vinifera 1613415_at AB074999.1 - - 1e-11 At3g44990 XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8) C.G. S.X.
0.02 8e-1 34 Zea mays Zm.9769.1.A1_at BM338306 - - 8e-2 At3g09960 calcineurin-like phosphoesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
L GO:0006073 The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00412 Glycoside Hydrolase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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