CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g36710

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g36710 818243 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MOPBFVA S.X. H.G.
0.33 38.1 At1g35820 840484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At3g08500 819997 MYB83 (myb domain protein 83) Encodes a putative R2R3-type MYB transcription factor (MYB83). S.X. H.G.
0.22 17.5 At1g40150 3767174 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.14 6.8 At2g29610 817511 - pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domain S.X. H.G.
0.12 4.9 At3g29650 3769022 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
440.1 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
403.5 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
342.9 100.0 E-MEXP-1451-raw-cel-1585200362
261.6 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
238.2 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
231.7 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
230.7 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
220.6 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
212.1 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
209.0 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At5g50140 835079 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 6e-1 36 At3g60730 825244 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 6e-1 36 At2g45220 819130 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOM C.G. S.X.
0.01 6e-1 36 At1g10330 837572 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.01 2e+0 34 At5g55890 835685 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g55880 835684 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e+0 34 At5g07430 830634 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 2e+0 34 At5g10550 830920 GTE2 (Global transcription factor group E 2) This gene is predicted to encode a bromodomain-containing protein. A plant line expressing RNAi constructs targeted against GTE7 shows some resistance to agrobacterium-mediated root transformation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-4 46 Glycine max Gma.13597.1.A1_at CD401381 - - 2e-37 At5g47500 pectinesterase family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEi0016B10r2_at HVSMEi0016B10r2 - - 1e-1 At2g25500 - C.G. S.X.
0.02 1e+0 36 Oryza sativa Os08g0395300 AU223384 - Clathrin adaptor complex, small chain familyprotein 1e-35 At2g19790 clathrin adaptor complex small chain family protein C.G. S.X.
0.06 9e-7 56 Populus trichocarpa PtpAffx.219792.1.S1_at pmrna35889 hypothetical protein - 2e-3 At2g36700 pectinesterase family protein C.G. S.X.
0.02 4e-2 40 Triticum aestivum Ta.7915.1.A1_at CD374091 - - 1e+0 At4g28950 ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1614507_at CF373139 hypothetical protein LOC100250082 - 5e-1 At5g12300 C2 domain-containing protein C.G. S.X.
0.01 4e+0 32 Zea mays Zm.5701.1.S1_at BG841157 AP-4 complex subunit sigma-1 - 7e-37 At2g19790 clathrin adaptor complex small chain family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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