CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g36590

Gene name ProT3 (PROLINE TRANSPORTER 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At2g36590 818232 ProT3 (PROLINE TRANSPORTER 3) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. S.X. H.G.
0.55 70.6 At4g28140 828929 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. S.X. H.G.
0.50 65.3 At2g20880 816622 AP2 domain-containing transcription factor, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, cytoplasm;POMBFV S.X. H.G.
0.43 55.3 At3g56260 824792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
0.18 11.4 At1g64380 842745 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. S.X. H.G.
0.14 6.8 At1g10370 837576 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF S.X. H.G.
0.03 0.6 At5g17000 831563 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
463.1 100.0 E-MEXP-1443-raw-cel-1581869921
123.3 99.9 GSM152135 Col-0 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
118.2 99.9 GSM152137 Col-0 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
115.9 99.9 E-MEXP-1443-raw-cel-1581869863
105.0 99.9 GSM152143 siz1-3 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
97.3 99.9 GSM152141 siz1-3 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
92.6 99.9 GSM152145 siz1-3 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
85.8 99.9 E-MEXP-546-raw-cel-863289607
79.7 99.9 E-MEXP-546-raw-cel-863289668
75.7 99.9 E-MEXP-546-raw-cel-863289298
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.87 0 1556 At2g39890 818576 PROT1 (PROLINE TRANSPORTER 1) Encodes a proline transporter with affinity for gly betaine, proline and GABA. Protein is expressed in the vascular tissue, specifically the phloem. C.G. S.X.
0.69 0 636 At3g55740 824740 PROT2 (PROLINE TRANSPORTER 2) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed most highly in the roots. C.G. S.X.
0.02 2e-1 38 At2g26710 817212 BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1) Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion. C.G. S.X.
0.01 6e-1 36 At4g35380 829691 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBA C.G. S.X.
0.01 3e+0 34 At5g14990 831351 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV C.G. S.X.
0.02 3e+0 34 At5g17190 831583 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 3e+0 34 At5g53130 835393 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) member of Cyclic nucleotide gated channel family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-9 65 Glycine max Gma.8556.1.S1_at BU764573 - - 4e-3 At2g39890 PROT1 (PROLINE TRANSPORTER 1) C.G. S.X.
0.10 6e-9 61 Hordeum vulgare Contig9112_at Contig9112 - - 3e-6 At2g39890 PROT1 (PROLINE TRANSPORTER 1) C.G. S.X.
0.07 9e-8 59 Oryza sativa Os03g0644400 AB022783.1 - Amino acid permease 5e-3 At2g39890 PROT1 (PROLINE TRANSPORTER 1) C.G. S.X.
0.32 7e-14 79 Populus trichocarpa PtpAffx.207738.1.S1_s_at pmrna15379 proline transporter - 5e-14 At2g36590 ProT3 (PROLINE TRANSPORTER 3) C.G. S.X.
0.10 1e-8 61 Triticum aestivum Ta.30603.2.S1_x_at CA741782 - - 5e-9 At2g36590 ProT3 (PROLINE TRANSPORTER 3) C.G. S.X.
0.06 8e-4 44 Vitis vinifera 1608940_at CF205121.1 hypothetical protein LOC100242738 - 1e-3 At2g36590 ProT3 (PROLINE TRANSPORTER 3) C.G. S.X.
0.07 5e-3 42 Zea mays Zm.5584.1.S1_at AW424391 - - 1e-2 At2g36590 ProT3 (PROLINE TRANSPORTER 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0015824 The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of, within or between cells.
C GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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