Gene omics information

Query gene ID At2g36080
Gene name DNA-binding protein, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At2g36080818181DNA-binding protein, putativeEncodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity.S.X.H.G.
0.6378.1At3g06860819870MFP2 (MULTIFUNCTIONAL PROTEIN 2)Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.S.X.H.G.
0.5673.0At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.S.X.H.G.
0.5673.0At4g16210827314ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPAS.X.H.G.
0.5368.6At3g45310823669cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFS.X.H.G.
0.5368.6At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBS.X.H.G.
0.4457.2At5g13360831177auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMFS.X.H.G.
0.4457.2At5g66920836826sks17 (SKU5 Similar 17)F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOAS.X.H.G.
0.4253.9At3g62860825461esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:plasma membrane;BOPMFVAS.X.H.G.
0.4050.8At2g42790818879CSY3 (citrate synthase 3)Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
42.499.8GSM62704arf6 arf8 flowers_stage 13-14GSE2848Auxin Response Factor mediated flower gene expression
41.299.8GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
33.899.7GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
32.599.7GSM133321RIKEN-LI6AGSE5701AtGenExpress: Basic hormone treatment of seeds
29.599.7GSM134300Penfield_1-2_endosperm-control_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
29.299.7GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
27.099.7GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
26.799.7GSM133318RIKEN-LI4BGSE5701AtGenExpress: Basic hormone treatment of seeds
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.262e-1893At3g11580820331DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PC.G.S.X.
0.217e-1581At5g06250830512transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.072e-1273At1g13260837886RAV1Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.C.G.S.X.
0.076e-961At1g01030839321NGA3 (NGATHA3)F:transcription factor activity;P:flower development, leaf development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.152e-859At2g46870819300NGA1 (NGATHA1)F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;PC.G.S.X.
0.111e-757At4g01500826750NGA4 (NGATHA4)F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;PFC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.082e-1273Glycine maxGmaAffx.2269.1.S1_atAW349880--2e-30At1g13260RAV1C.G.S.X.
0.084e-238Hordeum vulgareContig19699_atContig19699--3e-8At1g25560TEM1 (TEMPRANILLO 1)C.G.S.X.
0.143e-1273Oryza sativaOs12g0157000AK110593.1-Hypothetical protein1e-5At2g36080DNA-binding protein, putativeC.G.S.X.
0.228e-652Populus trichocarpaPtpAffx.201417.1.S1_atpmrna2797--5e-17At2g46870NGA1 (NGATHA1)C.G.S.X.
0.121e-448Triticum aestivumTaAffx.35357.1.S1_atBQ609009--7e-5At2g36080DNA-binding protein, putativeC.G.S.X.
0.061e-1065Vitis vinifera1618998_atCF204007.1--5e-16At4g01500NGA4 (NGATHA4)C.G.S.X.
0.074e-857Zea maysZm.12114.1.S1_atBM379167DNA-binding protein RAV1-1e-11At1g25560TEM1 (TEMPRANILLO 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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