CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g36080

Gene name DNA-binding protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At2g36080 818181 DNA-binding protein, putative Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity. S.X. H.G.
0.63 78.1 At3g06860 819870 MFP2 (MULTIFUNCTIONAL PROTEIN 2) Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. S.X. H.G.
0.56 73.0 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. S.X. H.G.
0.56 73.0 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA S.X. H.G.
0.53 68.6 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF S.X. H.G.
0.53 68.6 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB S.X. H.G.
0.44 57.2 At5g13360 831177 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF S.X. H.G.
0.44 57.2 At5g66920 836826 sks17 (SKU5 Similar 17) F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOA S.X. H.G.
0.42 53.9 At3g62860 825461 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:plasma membrane;BOPMFVA S.X. H.G.
0.40 50.8 At2g42790 818879 CSY3 (citrate synthase 3) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.4 99.8 GSM62704 arf6 arf8 flowers_stage 13-14 GSE2848 Auxin Response Factor mediated flower gene expression
41.2 99.8 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
35.8 99.7 E-MEXP-1468-raw-cel-1591138985
33.8 99.7 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
32.5 99.7 GSM133321 RIKEN-LI6A GSE5701 AtGenExpress: Basic hormone treatment of seeds
29.5 99.7 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
29.2 99.7 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
28.4 99.7 E-MEXP-1468-raw-cel-1591139018
27.0 99.7 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
26.7 99.7 GSM133318 RIKEN-LI4B GSE5701 AtGenExpress: Basic hormone treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.26 2e-18 93 At3g11580 820331 DNA-binding protein, putative F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
0.21 7e-15 81 At5g06250 830512 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.07 2e-12 73 At1g13260 837886 RAV1 Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. C.G. S.X.
0.07 6e-9 61 At1g01030 839321 NGA3 (NGATHA3) F:transcription factor activity;P:flower development, leaf development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.15 2e-8 59 At2g46870 819300 NGA1 (NGATHA1) F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;P C.G. S.X.
0.11 1e-7 57 At4g01500 826750 NGA4 (NGATHA4) F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;PF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-12 73 Glycine max GmaAffx.2269.1.S1_at AW349880 - - 2e-30 At1g13260 RAV1 C.G. S.X.
0.08 4e-2 38 Hordeum vulgare Contig19699_at Contig19699 - - 3e-8 At1g25560 TEM1 (TEMPRANILLO 1) C.G. S.X.
0.14 3e-12 73 Oryza sativa Os12g0157000 AK110593.1 - Hypothetical protein 1e-5 At2g36080 DNA-binding protein, putative C.G. S.X.
0.22 8e-6 52 Populus trichocarpa PtpAffx.201417.1.S1_at pmrna2797 - - 5e-17 At2g46870 NGA1 (NGATHA1) C.G. S.X.
0.12 1e-4 48 Triticum aestivum TaAffx.35357.1.S1_at BQ609009 - - 7e-5 At2g36080 DNA-binding protein, putative C.G. S.X.
0.06 1e-10 65 Vitis vinifera 1618998_at CF204007.1 - - 5e-16 At4g01500 NGA4 (NGATHA4) C.G. S.X.
0.07 4e-8 57 Zea mays Zm.12114.1.S1_at BM379167 DNA-binding protein RAV1 - 1e-11 At1g25560 TEM1 (TEMPRANILLO 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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