CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g35980

Gene name YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At2g35980 818171 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. S.X. H.G.
0.57 73.8 At1g15520 838122 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. S.X. H.G.
0.44 57.2 At1g32960 840190 SBT3.3 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFM S.X. H.G.
0.36 43.6 At1g26420 839184 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA S.X. H.G.
0.29 30.3 At5g25250 832596 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV S.X. H.G.
0.20 14.4 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
157.9 99.9 GSM142838 MG001_ATH1_A17-Torres-6N3 GSE6176 Impact of Type III effectors on plant defense responses
155.5 99.9 E-MEXP-807-raw-cel-1173273170
127.1 99.9 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
115.9 99.9 GSM131139 AtGen_B-25_2-4-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
101.5 99.9 GSM131112 AtGen_B-40_3-5-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
99.6 99.9 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
93.6 99.9 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
90.7 99.9 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
90.2 99.9 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
71.6 99.9 GSM133705 Short_1-1_ozone_Rep1_ATH1 GSE5722 Functional Genomics of Ozone Stress in Arabidopsis.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 5e-3 42 At3g11650 820337 NHL2 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus and spermine. Overexpression of the gene induces the expression of PR-1 gene and shows light-dependent 'speck disease-like' symptom on leaves. The gene product is localized to the chloroplast C.G. S.X.
0.01 1e+0 34 At5g01720 831688 F-box family protein (FBL3) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MPOFBV C.G. S.X.
0.01 1e+0 34 At5g20990 832224 B73 Involved in molybdenum cofactor (Moco) biosynthesis, inserting Mo into Molybdopterin. sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling. C.G. S.X.
0.02 1e+0 34 At3g06410 819815 nucleic acid binding / zinc ion binding F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;OMPFBV C.G. S.X.
0.03 1e+0 34 At3g20600 821607 NDR1 (non race-specific disease resistance 1) Required for non-race specific resistance to bacterial and fungal pathogens.Mediates systemic acquired resistance (SAR) response. C.G. S.X.
0.02 1e+0 34 At3g20590 821606 non-race specific disease resistance protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 34 At3g05750 819744 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;OMBFPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.35649.1.A1_at BE822077 - - 3e+0 At4g01535 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig3746_at Contig3746 - - 1e-1 At4g18335 unknown protein C.G. S.X.
0.03 7e-1 36 Oryza sativa OsAffx.2127.1.S1_at - - - 0 C.G. S.X.
0.05 8e-3 42 Populus trichocarpa PtpAffx.8428.1.S1_at CV234319 - - 8e-3 At2g35980 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) C.G. S.X.
0.04 6e+0 32 Triticum aestivum TaAffx.26615.1.S1_at CA687136 - - 1e+1 At5g23640 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1608020_at CB981965 - - 4e+0 At5g19890 peroxidase, putative C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.277.1.A1_at AI670405 - - 3e+0 At4g05265 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010150 The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism.
X GO:0051607 Reactions triggered in response to the presence of a virus that act to protect the cell or organism.
S GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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