CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g35730

Gene name heavy-metal-associated domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At2g35730 818143 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:endomembrane system;P S.X. H.G.
0.20 14.4 At5g12880 831128 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.17 10.2 At4g08770 826447 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POF S.X. H.G.
0.08 2.3 At1g68450 843174 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.07 1.9 At4g18430 827574 AtRABA1e (Arabidopsis Rab GTPase homolog A1e) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
159.5 99.9 E-MEXP-711-raw-cel-1563002902
146.4 99.9 GSM142846 MG001_ATH1_A27-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
128.4 99.9 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
105.7 99.9 E-MEXP-711-raw-cel-1563002768
81.4 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
80.1 99.9 GSM133030 BC482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
79.7 99.9 GSM142845 MG001_ATH1_A26-Torres-8N3 GSE6176 Impact of Type III effectors on plant defense responses
77.5 99.9 GSM226548 Slice6JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
74.9 99.9 GSM128719 Pieterse_1-5_avrPstDC3000-12h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
65.8 99.8 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 4e-2 38 At4g28390 828955 AAC3 (ADP/ATP CARRIER 3) Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli). C.G. S.X.
0.03 2e-1 36 At1g75520 843888 SRS5 (SHI-RELATED SEQUENCE 5) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. C.G. S.X.
0.03 7e-1 34 At3g61770 825350 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP C.G. S.X.
0.02 7e-1 34 At3g05620 819728 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.03 7e-1 34 At1g07080 837219 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:vacuole;MPO C.G. S.X.
0.03 7e-1 34 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. C.G. S.X.
0.02 3e+0 32 At5g50520 835120 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BOPFMA C.G. S.X.
0.02 3e+0 32 At5g50630 835132 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BOPFMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-1 34 Glycine max GmaAffx.18444.1.S1_at BI469783 - - 6e-1 At2g35730 heavy-metal-associated domain-containing protein C.G. S.X.
0.04 5e+0 30 Hordeum vulgare EBem04_SQ002_C07_s_at EBem04_SQ002_C07 - - 3e+0 At5g19151 unknown protein C.G. S.X.
0.05 5e+0 32 Oryza sativa OsAffx.4323.2.S1_s_at - - - 0 C.G. S.X.
0.04 2e-1 36 Populus trichocarpa PtpAffx.114663.1.A1_at CV249914 - - 1e-3 At1g08390 nucleic acid binding C.G. S.X.
0.04 7e-1 34 Triticum aestivum TaAffx.57082.1.S1_at CA637040 - - 4e+0 At5g55508 unknown protein C.G. S.X.
0.04 5e-2 36 Vitis vinifera 1620745_at CD714773 - - 8e-2 At5g62750 unknown protein C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.60.1.S1_at AI665094 - - 8e-1 At2g41650 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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