CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g35710

Gene name glycogenin glucosyltransferase (glycogenin)-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.78 88.6 At2g35710 818140 glycogenin glucosyltransferase (glycogenin)-related F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:endomembrane system;PMFOBV S.X. H.G.
0.71 84.2 At1g23710 838981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.71 84.2 At5g54490 835537 PBP1 (PINOID-BINDING PROTEIN 1) Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels. S.X. H.G.
0.71 84.2 At3g50930 824257 BCS1 (CYTOCHROME BC1 SYNTHESIS) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:mitochondrion, plastid;BOMFPAV S.X. H.G.
0.70 83.5 At2g32030 817763 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOFPAVM S.X. H.G.
0.69 82.9 At5g57510 835855 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.67 81.6 At3g08720 820019 S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins. S.X. H.G.
0.66 80.1 At3g23230 821901 ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.65 79.6 At3g25250 822119 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) Arabidopsis protein kinase S.X. H.G.
0.63 78.1 At2g44840 819093 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
200.3 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
166.5 100.0 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
158.6 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
157.1 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
122.7 99.9 E-MEXP-807-raw-cel-1173273116
122.2 99.9 E-MEXP-807-raw-cel-1173273170
102.6 99.9 E-MEXP-807-raw-cel-1173273144
100.2 99.9 E-MEXP-807-raw-cel-1173273060
98.5 99.9 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
97.7 99.9 GSM39197 RRE1_Chitin3 GSE2169 rre1 and rre2 mutants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 1e-113 410 At4g16600 827361 transferase, transferring glycosyl groups / transferase, transferring hexosyl groups F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:endomembrane system;PMFOBV C.G. S.X.
0.01 1e-2 42 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family C.G. S.X.
0.01 5e-2 40 At4g27860 828899 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBF C.G. S.X.
0.02 7e-1 36 At3g25550 822142 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 7e-1 36 At3g14460 820669 disease resistance protein (NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFAV C.G. S.X.
0.01 7e-1 36 At2g01110 814640 APG2 (ALBINO AND PALE GREEN 2) mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein. C.G. S.X.
0.01 3e+0 34 At5g42440 834250 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.45739.1.S1_at BI469739 - - 2e-7 At5g13090 unknown protein C.G. S.X.
0.06 6e-9 61 Hordeum vulgare Contig11572_at Contig11572 - - 3e-13 At4g16600 transferase, transferring glycosyl groups / transferase, transferring hexosyl groups C.G. S.X.
0.13 1e-13 79 Oryza sativa Os04g0553800 AK067441.1 - Glycosyl transferase, family 8 protein 8e-14 At2g35710 glycogenin glucosyltransferase (glycogenin)-related C.G. S.X.
0.16 5e-18 93 Populus trichocarpa PtpAffx.30967.3.S1_at CX187005 hypothetical protein - 9e-11 At2g35710 glycogenin glucosyltransferase (glycogenin)-related C.G. S.X.
0.04 3e-6 54 Triticum aestivum Ta.13293.1.S1_at CA666180 - - 2e-13 At4g16600 transferase, transferring glycosyl groups / transferase, transferring hexosyl groups C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620881_at CF568956 - - 3e-4 At5g54900 ATRBP45A (RNA-binding protein 45A) C.G. S.X.
0.02 3e-1 36 Zea mays Zm.5373.1.S1_at BF728005 hypothetical protein LOC100276438 - 1e+0 At5g26170 WRKY50 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
C GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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