CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g35650

Gene name ATCSLA07 (CELLULOSE SYNTHASE LIKE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g35650 818134 ATCSLA07 (CELLULOSE SYNTHASE LIKE) a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm. S.X. H.G.
0.45 58.3 At5g63380 836457 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. S.X. H.G.
0.44 57.2 At2g32040 817764 integral membrane transporter family protein The At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids. S.X. H.G.
0.42 53.9 At1g01540 839533 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.41 52.4 At1g14140 837973 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV S.X. H.G.
0.41 52.4 At4g09640 826550 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA S.X. H.G.
0.38 46.7 At2g30980 817649 ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta) Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. S.X. H.G.
0.38 46.7 At5g18500 831968 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.38 46.7 At4g38040 829960 exostosin family protein F:catalytic activity;P:biological_process unknown;C:chloroplast, membrane;PMOBFV S.X. H.G.
0.38 46.7 At2g37585 818335 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein F:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.5 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
19.7 99.6 GSM38668 NSNP GSE2268 Arabidopsis polysome microarray
15.3 99.4 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.7 99.4 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.5 99.3 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.4 99.3 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.1 99.3 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.9 99.3 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.8 99.3 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.4 99.3 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.24 2e-20 101 At1g23480 838956 ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3) encodes a gene similar to cellulose synthase C.G. S.X.
0.03 2e-11 71 At4g07960 826301 ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12) encodes a gene similar to cellulose synthase C.G. S.X.
0.04 9e-7 56 At2g24630 816999 ATCSLC08 encodes a gene similar to cellulose synthase C.G. S.X.
0.11 1e-5 52 At4g13410 826972 ATCSLA15 encodes a gene similar to cellulose synthase C.G. S.X.
0.08 2e-4 48 At5g03760 831734 ATCSLA09 encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root. C.G. S.X.
0.11 2e-4 48 At3g56000 824766 ATCSLA14 encodes a gene similar to cellulose synthase C.G. S.X.
0.03 1e-2 42 At5g16190 831477 ATCSLA11 encodes a gene similar to cellulose synthase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-3 46 Glycine max Gma.10876.2.S1_a_at CA800320 - - 2e-7 At5g22740 ATCSLA02 C.G. S.X.
0.07 3e-2 40 Hordeum vulgare Contig10369_at Contig10369 - - 3e-19 At5g22740 ATCSLA02 C.G. S.X.
0.09 7e-3 44 Oryza sativa Os03g0169500 9631.m00665 - Glycosyl transferase, family 2 domain containingprotein 2e-4 At4g16590 ATCSLA01 C.G. S.X.
0.22 2e-18 95 Populus trichocarpa PtpAffx.209451.1.S1_at pmrna18726 hypothetical protein - 6e-36 At1g23480 ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3) C.G. S.X.
0.03 1e-3 46 Triticum aestivum TaAffx.11185.1.S1_s_at CD867104 - - 7e-23 At4g07960 ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1622115_at CD004218 hypothetical protein LOC100257320 - 5e-1 At2g20120 COV1 (CONTINUOUS VASCULAR RING) C.G. S.X.
0.05 9e-2 38 Zea mays Zm.13803.1.A1_at BE345572 hypothetical protein LOC100192112 - 5e-8 At5g22740 ATCSLA02 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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