CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g35100

Gene name ARAD1 (ARABINAN DEFICIENT 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At2g35100 818076 ARAD1 (ARABINAN DEFICIENT 1) Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems. S.X. H.G.
0.67 81.6 At4g38500 830007 unknown protein F:unknown;P:unknown;C:Golgi apparatus;POBA S.X. H.G.
0.58 73.8 At4g09630 826549 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVA S.X. H.G.
0.56 73.0 At3g03570 821234 - F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPO S.X. H.G.
0.55 70.6 At5g11040 830971 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.51 66.3 At1g12470 837804 Pep3/Vps18/deep orange family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPB S.X. H.G.
0.51 66.3 At1g19430 838527 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;MOFPBVA S.X. H.G.
0.49 63.5 At3g56740 824841 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOB S.X. H.G.
0.49 63.5 At1g78800 844216 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF S.X. H.G.
0.49 63.5 At3g17900 821058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
73.5 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
55.0 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
42.9 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.3 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.8 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.1 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.9 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.7 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.1 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
33.0 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 1e-17 91 At5g44930 834523 ARAD2 (ARABINAN DEFICIENT 2) Encodes a putative arabinosyltransferase. C.G. S.X.
0.02 4e-2 40 At4g11100 826711 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPAV C.G. S.X.
0.01 4e-2 40 At3g53110 824477 LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA. C.G. S.X.
0.02 4e-2 40 At3g53310 824499 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV C.G. S.X.
0.01 2e-1 38 At5g19400 832060 SMG7 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 2e-1 38 At5g10770 830944 chloroplast nucleoid DNA-binding protein, putative F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOB C.G. S.X.
0.01 2e-1 38 At5g54200 835508 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Glycine max Gma.9947.1.S1_at BF324269 - - 1e-4 At5g63350 unknown protein C.G. S.X.
0.03 1e+0 34 Hordeum vulgare Contig9796_at Contig9796 - - 5e-2 At1g47970 unknown protein C.G. S.X.
0.06 8e-2 40 Oryza sativa Os07g0567000 NM_186358.1 - Exostosin-like family protein 4e-2 At2g35100 ARAD1 (ARABINAN DEFICIENT 1) C.G. S.X.
0.11 1e-15 85 Populus trichocarpa PtpAffx.63326.1.A1_at CV244522 hypothetical protein - 5e-16 At2g35100 ARAD1 (ARABINAN DEFICIENT 1) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.6605.1.S1_at CA682009 - - 3e-4 At4g19100 unknown protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1610908_at CF515504 hypothetical protein LOC100250738 - 1e+0 At2g18320 - C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.1050.1.A1_at AI881808 - - 3e+0 At4g35025 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0045489 The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification
00439 Rhamnogalacturonan I biosynthesis
00441 Rhamnogalacturonan II biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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