CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g34930

Gene name disease resistance family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g34930 818058 disease resistance family protein F:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAV S.X. H.G.
0.67 81.6 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.55 70.6 At5g44050 834428 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA S.X. H.G.
0.53 68.6 At5g53750 835456 - F:molecular_function unknown;P:response to wounding;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At4g23200 828419 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
180.7 100.0 E-MEXP-98-raw-cel-320188859
132.8 99.9 GSM131147 AtGen_B-33_3-5-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
123.0 99.9 E-MEXP-98-raw-cel-320189024
114.3 99.9 GSM131131 AtGen_B-17_2-3-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
114.2 99.9 GSM131145 AtGen_B-31_3-3-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
111.1 99.9 E-MEXP-98-raw-cel-320188804
96.9 99.9 GSM131135 AtGen_B-21_2-7-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
90.9 99.9 GSM131143 AtGen_B-29_3-1-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
88.9 99.9 GSM131420 AtGen_6-8214_Woundingstress-Shoots-1.0h_Rep2 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
88.4 99.9 GSM131129 AtGen_B-15_2-1-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-2 42 At5g06940 830585 leucine-rich repeat family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 9e-2 40 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter C.G. S.X.
0.01 3e-1 38 At4g10670 826660 GTC2 Homologous to yeast SPT16, a general chromatin factor required for transcription C.G. S.X.
0.01 3e-1 38 At4g35180 829671 LHT7 (Lys/His transporter 7) F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PFMOB C.G. S.X.
0.01 3e-1 38 At3g58610 825030 ketol-acid reductoisomerase F:coenzyme binding, oxidoreductase activity, binding, ketol-acid reductoisomerase activity, catalytic activity;P:response to cadmium ion, branched chain family amino acid biosynthetic process;C:in 6 components;BOFAP C.G. S.X.
0.01 3e-1 38 At3g25560 822143 NIK2 (NSP-INTERACTING KINASE 2) F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 3e-1 38 At2g26380 817178 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Glycine max GmaAffx.55680.1.S1_at BE475029 - - 2e-44 At5g56750 Ndr family protein C.G. S.X.
0.02 7e-1 36 Hordeum vulgare Contig16344_at Contig16344 - - 2e+0 At3g15410 leucine-rich repeat family protein C.G. S.X.
0.01 7e-1 38 Oryza sativa Os04g0465800 AK064701.1 - - 6e-1 At2g35640 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 5e-1 38 Populus trichocarpa PtpAffx.225085.1.S1_s_at pmrna44181 hypothetical protein - 4e+0 At5g65274 - C.G. S.X.
0.01 1e+0 36 Triticum aestivum Ta.15719.1.S1_at CA486505 - - 2e-2 At5g06690 WCRKC1 (WCRKC THIOREDOXIN 1) C.G. S.X.
0.01 7e-3 42 Vitis vinifera 1611882_at CF512921 hypothetical protein LOC100268072 - 7e-13 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
0.01 4e-2 40 Zea mays Zm.8721.1.A1_at BM339688 catalytic/ oxidoreductase, acting on NADH or NADPH - 3e-1 At1g10530 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
S GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage