CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g34800

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At2g34800 818045 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.81 90.4 At2g01500 814678 PFS2 (PRETTY FEW SEEDS 2) PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature. S.X. H.G.
0.77 88.0 At2g40440 818638 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.75 86.9 At1g52430 841674 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;POBMF S.X. H.G.
0.74 86.1 At4g16050 827290 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.74 86.1 At4g25510 828655 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.73 85.5 At4g02970 828121 AT7SL-1 (Arabidopsis 7SL RNA 1) Signal recognition particle. Type 4 of RNA polymerase III dependent genes. S.X. H.G.
0.73 85.5 At1g29730 839851 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.68 82.2 At5g44330 834458 male sterility MS5 family protein F:binding;P:biological_process unknown;C:unknown;POBA S.X. H.G.
0.67 81.6 At3g57900 824959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
680.1 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
495.6 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
487.0 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
481.2 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
444.3 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
416.9 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
277.2 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
252.4 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
238.0 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
198.9 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e+0 30 At4g39450 830100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.02 4e+0 30 At3g24300 822018 AMT1 Encodes a plasma membrane localized ammonium transporter. C.G. S.X.
0.01 4e+0 30 At3g14570 820683 ATGSL04 (glucan synthase-like 4) encodes a protein similar to callose synthase C.G. S.X.
0.01 4e+0 30 At2g05710 815120 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. C.G. S.X.
0.05 4e+0 30 At1g71050 843445 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFBM C.G. S.X.
0.02 2e+1 28 At5g38130 833793 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:unknown;PF C.G. S.X.
0.01 2e+1 28 At5g43900 834412 MYA2 (ARABIDOPSIS MYOSIN 2) Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-1 34 Glycine max GmaAffx.24533.1.S1_at BU762311 - - 8e-1 At2g34800 unknown protein C.G. S.X.
0.05 8e+0 28 Hordeum vulgare HW09H22u_at HW09H22u - - 1e+0 At4g13230 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
0.04 2e+0 32 Oryza sativa Os01g0710600 NM_191699.1 - - 4e+0 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) C.G. S.X.
0.06 6e+0 30 Populus trichocarpa PtpAffx.203276.1.S1_at pmrna6493 hypothetical protein - 3e-3 At4g11190 disease resistance-responsive family protein / dirigent family protein C.G. S.X.
0.06 4e+0 30 Triticum aestivum TaAffx.66695.1.A1_at BG906502 - - 3e+0 At1g15620 unknown protein C.G. S.X.
0.09 5e+0 28 Vitis vinifera 1614644_x_at CF205159.1 - - 1e+0 At2g04930 NLI interacting factor (NIF) family protein C.G. S.X.
0.06 7e+0 28 Zea mays ZmAffx.1359.1.S1_at 40794996-47 - - 1e+1 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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