Gene omics information

Query gene ID At2g34770
Gene name FAH1 (FATTY ACID HYDROXYLASE 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7888.6At2g34770818042FAH1 (FATTY ACID HYDROXYLASE 1)encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.S.X.H.G.
0.7284.8At4g20890827837TUB9tubulin 9S.X.H.G.
0.6882.2At1g54290841870eukaryotic translation initiation factor SUI1, putativeF:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOAVBS.X.H.G.
0.6781.6At1g22200838825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFPS.X.H.G.
0.6781.6At1g14290837990SBH2 (SPHINGOID BASE HYDROXYLASE 2)Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.S.X.H.G.
0.6781.6At5g53360835417seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:endomembrane system, nucleus;MPOS.X.H.G.
0.6781.6At1g79660844305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6781.6At3g07880819979Rho GDP-dissociation inhibitor family proteinF:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPOS.X.H.G.
0.6781.6At5g58950836012protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVAS.X.H.G.
0.6680.1At3g47080823861bindingF:binding;P:unknown;C:unknown;PBOAMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
66.599.8E-MEXP-285-raw-cel-440782725
56.599.8E-MEXP-285-raw-cel-440782791
35.699.7GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
33.399.7E-ATMX-35-raw-cel-1574334880
31.299.7GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
28.899.7GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
27.899.7GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
27.199.7GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
27.099.7GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
25.999.7E-ATMX-35-raw-cel-1574334864
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.311e-1997At4g20870827835FAH2 (FATTY ACID HYDROXYLASE 2)encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.C.G.S.X.
0.013e-136At4g05040825846ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.031e+034At4g13440826976calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOC.G.S.X.
0.021e+034At3g124308204223'-5' exonuclease/ nucleic acid bindingF:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;PMC.G.S.X.
0.021e+034At1g35630840463protease-associated zinc finger (C3HC4-type RING finger) family proteinF:peptidase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFBC.G.S.X.
0.011e+034At1g17870838366EGY3 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3)S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.C.G.S.X.
0.021e+034At1g04880839388high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOPFBVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.229e-1271Glycine maxGma.9978.2.S1_a_atAI495867--6e-12At2g34770FAH1 (FATTY ACID HYDROXYLASE 1)C.G.S.X.
0.308e-1063Hordeum vulgareContig6315_s_atContig6315--3e-9At2g34770FAH1 (FATTY ACID HYDROXYLASE 1)C.G.S.X.
0.255e-859Oryza sativaOs03g0780800AK103085.1-Fatty acid hydroxylase domain containing protein4e-8At2g34770FAH1 (FATTY ACID HYDROXYLASE 1)C.G.S.X.
0.322e-28127Populus trichocarpaPtpAffx.23797.1.S1_atCV263768hypothetical protein-3e-12At4g20870FAH2 (FATTY ACID HYDROXYLASE 2)C.G.S.X.
0.257e-1271Triticum aestivumTaAffx.94898.2.S1_s_atCK213057--1e-11At2g34770FAH1 (FATTY ACID HYDROXYLASE 1)C.G.S.X.
0.042e+032Vitis vinifera1616478_atCA812094--2e+1At4g21960PRXR1C.G.S.X.
0.252e-1375Zea maysZm.13691.1.S1_atCD441073inositolphosphorylceramide-B C-26 hydroxylase-7e-13At2g34770FAH1 (FATTY ACID HYDROXYLASE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0043069Any process that stops, prevents or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes.
XGO:0000038The chemical reactions and pathways involving fatty acids with a chain length of C18 or greater.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00429Link to KaPPA-View 4Sphingolipids synthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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