CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g34020

Gene name calcium ion binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At2g34020 817963 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF S.X. H.G.
0.61 76.7 At5g63650 836485 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. S.X. H.G.
0.50 65.3 At4g11610 826766 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.50 65.3 At5g02260 831736 ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.33 38.1 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO S.X. H.G.
0.21 15.8 At4g32460 829381 - F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
121.6 99.9 E-MEXP-1468-raw-cel-1591138985
109.5 99.9 E-MEXP-1468-raw-cel-1591139018
73.9 99.9 GSM133974 Birnbaum_1-4_StageI-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
57.9 99.8 E-MEXP-1468-raw-cel-1591138853
56.1 99.8 E-MEXP-1468-raw-cel-1591138721
53.4 99.8 E-MEXP-1468-raw-cel-1591138754
52.1 99.8 GSM133118 RIKEN-YAMAUCHI1B GSE5687 AtGenExpress: Different temperature treatment of seeds
47.5 99.8 GSM134515 Col-0_4day_dark_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
47.0 99.8 E-MEXP-1468-raw-cel-1591138886
44.9 99.8 GSM299329 pkl Mutant Germinating Seeds With Solvent Treatment Only Set 3 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 9e-78 291 At2g34030 817964 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;PMOFBA C.G. S.X.
0.28 7e-48 192 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF C.G. S.X.
0.02 2e-1 38 At1g70670 843404 caleosin-related family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.01 9e-1 36 At5g66960 836830 prolyl oligopeptidase family protein F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:membrane;OBMPFAV C.G. S.X.
0.02 9e-1 36 At2g21810 816717 CHP-rich zinc finger protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 9e-1 36 At2g22910 816822 GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein F:amino-acid N-acetyltransferase activity, N-acetyltransferase activity;P:arginine biosynthetic process, amino acid biosynthetic process, metabolic process;C:cytoplasm;BOAFP C.G. S.X.
0.01 9e-1 36 At2g38780 818460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM C.G. S.X.
0.01 9e-1 36 At1g64480 842756 CBL8 (CALCINEURIN B-LIKE PROTEIN 8) calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifs C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Glycine max Gma.14800.2.S1_at BE610029 - - 3e-27 At3g07670 SET domain-containing protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare HVSMEg0001H24r2_s_at HVSMEg0001H24r2 - - 8e-1 At3g09890 ankyrin repeat family protein C.G. S.X.
0.01 2e+0 36 Oryza sativa Os05g0171200 AK062702.1 - Embryo-specific 3 family protein 9e-2 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.224754.1.S1_at pmrna43579 hypothetical protein - 3e-2 At1g61480 S-locus protein kinase, putative C.G. S.X.
0.01 4e+0 34 Triticum aestivum TaAffx.9628.1.S1_at CA593303 - - 9e-1 At2g34020 calcium ion binding C.G. S.X.
0.02 4e-3 42 Vitis vinifera 1614170_at CB970175 similar to ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) - 4e+0 At5g27200 ACP5 (acyl carrier protein 5) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.10728.1.A1_at BQ539251 - - 4e+0 At2g10557 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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