CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g33790

Gene name AGP30 (ARABINOGALACTAN PROTEIN30)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At2g33790 817946 AGP30 (ARABINOGALACTAN PROTEIN30) pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family S.X. H.G.
0.50 65.3 At5g35940 833584 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM S.X. H.G.
0.33 38.1 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P S.X. H.G.
0.33 38.1 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO S.X. H.G.
0.33 38.1 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
245.8 100.0 GSM226535 L5SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
207.3 100.0 GSM133981 Birnbaum_1-11_StageII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
191.2 100.0 GSM226546 Slice4JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
171.8 100.0 GSM133980 Birnbaum_1-10_StageII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
162.0 99.9 GSM133970 Birnbaum_1-21_LRC-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
114.8 99.9 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
111.1 99.9 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
96.7 99.9 GSM265416 Arabidopsis, root cells, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
93.2 99.9 GSM252691 Section of Root from 270 mm to 340 mm harvested immediately rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
91.8 99.9 GSM218294 At_NaCl_cpctry-2 GSE8787 Expression analysis of the salt stress response in Arabidopsis mutants with defects in hair patterning
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 4e-10 65 At1g28290 839723 AGP31 (arabinogalactan-protein 31) Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development. C.G. S.X.
0.04 9e-2 38 At2g34700 818035 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 4e-1 36 At3g09560 820113 lipin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA C.G. S.X.
0.01 4e-1 36 At2g19710 816490 unknown protein F:unknown;P:biological_process unknown;C:unknown;MOFBPVA C.G. S.X.
0.01 1e+0 34 At4g30790 829202 unknown protein F:unknown;P:biological_process unknown;C:unknown;MOFBPAV C.G. S.X.
0.01 1e+0 34 At3g10370 820199 SDP6 (SUGAR-DEPENDENT 6) mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max GmaAffx.7695.1.S1_at BE021433 - - 4e-15 At2g30130 ASL5 C.G. S.X.
0.02 1e+1 30 Hordeum vulgare Contig15558_at Contig15558 - - 1e+0 At1g12080 unknown protein C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.26654.1.S1_x_at - - - 0 C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.203240.1.S1_x_at pmrna6419 hypothetical protein - 2e-1 At2g33790 AGP30 (ARABINOGALACTAN PROTEIN30) C.G. S.X.
0.04 2e+0 34 Triticum aestivum Ta.11133.2.S1_x_at CA692150 - - 2e-1 At2g30560 glycine-rich protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1614969_at CA810356 hypothetical protein LOC100252305 - 3e+0 At4g00390 transcription regulator C.G. S.X.
0.02 6e-1 34 Zea mays Zm.9441.1.A1_at AY105453.1 hypothetical protein LOC100278105 - 1e+0 At2g33790 AGP30 (ARABINOGALACTAN PROTEIN30) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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