Gene omics information

Query gene ID At2g33540
Gene name CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.124.9At2g33540817919CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)F:phosphoprotein phosphatase activity, CTD phosphatase activity;P:response to salt stress;C:nucleus;MOFPBVS.X.H.G.
0.7385.5At1g09980837532-F:unknown;P:biological_process unknown;C:mitochondrion;MOPS.X.H.G.
0.5065.3At5g41240834125ATGSTT2 (GLUTATHIONE S-TRANSFERASE THETA 2)Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.3338.1At1g55250841968HUB2 (HISTONE MONO-UBIQUITINATION 2)Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.S.X.H.G.
0.3032.1At3g11860820359unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
210.5100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
203.3100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
193.6100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
189.6100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
167.5100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
164.299.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
159.899.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
158.599.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
148.299.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
146.899.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-448At5g11260830996HY5 (ELONGATED HYPOCOTYL 5)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.C.G.S.X.
0.012e-346At5g15870831444glycosyl hydrolase family 81 proteinF:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:response to cyclopentenone;C:unknown;FPOMVBC.G.S.X.
0.018e-344At1g12380837793unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFVOBC.G.S.X.
0.013e-242At5g07780830671formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPOBFVAC.G.S.X.
0.013e-242At3g08630820010-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOFVC.G.S.X.
0.013e-242At1g13120837869emb1745 (embryo defective 1745)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nuclear pore;MOBFPVAC.G.S.X.
0.011e-140At5g580035008312CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4)Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including: incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-244Glycine maxGmaAffx.73799.1.S1_atBM525650--1e-3At2g33540CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)C.G.S.X.
0.019e-136Hordeum vulgareContig10035_atContig10035--5e+0Atmg00070-C.G.S.X.
0.063e-1069Oryza sativaOs11g0521900AK101343.1-CTD phosphatase-like 32e-10At2g33540CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)C.G.S.X.
0.228e-53210Populus trichocarpaPtpAffx.118864.1.S1_atCK104350hypothetical protein-2e-53At2g33540CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)C.G.S.X.
0.082e-1275Triticum aestivumTaAffx.36646.1.S1_atBJ322742--6e-13At2g33540CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)C.G.S.X.
0.011e-138Vitis vinifera1607799_atCB339201--2e-1At5g11160APT5 (Adenine phosphoribosyltransferase 5)C.G.S.X.
0.012e-448Zea maysZm.4487.1.A1_atAI734409SAM-dependent methyltransferase-2e+0At3g53235unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0009788Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage