Gene omics information

Query gene ID At2g33540
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.124.9At2g33540817919CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)F:phosphoprotein phosphatase activity, CTD phosphatase activity;P:response to salt stress;C:nucleus;MOFPBVS.X.H.G.
0.7385.5At1g09980837532-F:unknown;P:biological_process unknown;C:mitochondrion;MOPS.X.H.G.
0.5065.3At5g41240834125ATGSTT2 (GLUTATHIONE S-TRANSFERASE THETA 2)Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.3338.1At1g55250841968HUB2 (HISTONE MONO-UBIQUITINATION 2)Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.S.X.H.G.
0.3032.1At3g11860820359unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
189.6100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
159.899.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
158.599.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
148.299.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-448At5g11260830996HY5 (ELONGATED HYPOCOTYL 5)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.C.G.S.X.
0.012e-346At5g15870831444glycosyl hydrolase family 81 proteinF:hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity;P:response to cyclopentenone;C:unknown;FPOMVBC.G.S.X.
0.018e-344At1g12380837793unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFVOBC.G.S.X.
0.013e-242At5g07780830671formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPOBFVAC.G.S.X.
0.013e-242At3g08630820010-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOFVC.G.S.X.
0.013e-242At1g13120837869emb1745 (embryo defective 1745)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nuclear pore;MOBFPVAC.G.S.X.
0.011e-140At5g580035008312CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4)Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including: incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-244Glycine maxGmaAffx.73799.1.S1_atBM525650--1e-3At2g33540CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)C.G.S.X.
0.019e-136Hordeum vulgareContig10035_atContig10035--5e+0Atmg00070-C.G.S.X.
0.063e-1069Oryza sativaOs11g0521900AK101343.1-CTD phosphatase-like 32e-10At2g33540CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)C.G.S.X.
0.228e-53210Populus trichocarpaPtpAffx.118864.1.S1_atCK104350hypothetical protein-2e-53At2g33540CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)C.G.S.X.
0.082e-1275Triticum aestivumTaAffx.36646.1.S1_atBJ322742--6e-13At2g33540CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)C.G.S.X.
0.011e-138Vitis vinifera1607799_atCB339201--2e-1At5g11160APT5 (Adenine phosphoribosyltransferase 5)C.G.S.X.
0.012e-448Zea maysZm.4487.1.A1_atAI734409SAM-dependent methyltransferase-2e+0At3g53235unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0009788Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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