CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g33250

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At2g33250 817887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.57 73.8 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA S.X. H.G.
0.55 70.6 At5g20220 832144 zinc knuckle (CCHC-type) family protein F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB S.X. H.G.
0.44 57.2 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. S.X. H.G.
0.44 57.2 At1g66330 842950 senescence-associated family protein F:unknown;P:senescence;C:unknown;PB S.X. H.G.
0.41 52.4 At1g42550 840860 PMI1 (PLASTID MOVEMENT IMPAIRED1) Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. S.X. H.G.
0.35 41.6 At5g13770 831222 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMAB S.X. H.G.
0.25 22.6 At2g26080 817149 AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2) F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine decarboxylation via glycine cleavage system, glycine metabolic process;C:mitochondrion, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMP S.X. H.G.
0.21 15.8 At1g07010 837211 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV S.X. H.G.
0.18 11.4 At1g16720 838243 HCF173 (high chlorophyll fluorescence phenotype 173) Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.1 99.6 GSM245919 csn3-1 mutant dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
21.0 99.6 GSM142772 AM002_ATH1_A7-MCCOR-GFB GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
18.6 99.5 GSM142778 AM002_ATH1_A3-MCCOR-GFA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
16.4 99.5 GSM253154 end of the night A GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
15.8 99.5 GSM128653 Underwood_1-6_Cor-hrpS-10e6-24h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
15.5 99.5 GSM131435 AtGen_6-8611_Woundingstress-Shoots-24.0h_Rep1 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
15.4 99.5 GSM77055 00h Col-0 replicate A GSE3416 Diurnal gene expression in Arabidopsis thaliana Col-0 rosette leaves
15.2 99.4 GSM128659 Underwood_1-12_Mock-Inoculum-24h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
14.2 99.4 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.8 99.4 GSM253153 2h before the end of the night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-4 48 At5g24890 832558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.02 1e-4 48 At3g11330 820306 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MPBOFAV C.G. S.X.
0.02 1e-4 48 At3g49510 824113 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.03 5e-4 46 At5g01380 831895 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVA C.G. S.X.
0.03 5e-4 46 At5g12050 831078 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
0.04 5e-4 46 At4g04630 825795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 5e-4 46 At3g27290 822348 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.05 5e-4 46 At3g53310 824499 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV C.G. S.X.
0.03 2e-3 44 At5g54470 835535 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFM C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-4 48 Glycine max GmaAffx.86863.1.A1_at BU545164 - - 2e-5 At1g24170 LGT9 C.G. S.X.
0.04 6e-2 38 Hordeum vulgare Contig3265_s_at Contig3265 - - 3e-2 At2g35910 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 6e-2 40 Oryza sativa Os09g0451900 9637.m02457 - Hypothetical protein 6e+0 At3g62907 unknown protein C.G. S.X.
0.03 3e-3 44 Populus trichocarpa PtpAffx.211127.1.S1_at pmrna21863 - - 7e-3 At5g24890 unknown protein C.G. S.X.
0.04 1e-1 38 Triticum aestivum TaAffx.71193.1.A1_at BE492362 - - 5e-5 At2g33510 protein binding C.G. S.X.
0.03 2e-3 42 Vitis vinifera 1622695_at CF414053 hypothetical protein LOC100267469 - 2e-2 At3g63230 unknown protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.6246.1.S1_a_at CB042879 hypothetical protein LOC100274295 /// hypothetical protein LOC100277252 - 1e-5 At2g22080 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage