CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g33240

Gene name XID

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At2g33240 817886 XID member of Myosin-like proteins S.X. H.G.
0.33 38.1 At1g05630 837069 5PTASE13 Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light–stimulated increase in cytosolic calcium ion. S.X. H.G.
0.33 38.1 At1g78980 844238 SRF5 (STRUBBELIG-RECEPTOR FAMILY 5) F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.33 38.1 At2g23660 816897 LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) F:unknown;P:biological_process unknown;C:unknown;PMBOF S.X. H.G.
0.19 12.7 At3g58160 824985 XIJ Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
483.8 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
218.3 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
151.0 99.9 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
92.8 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
86.1 99.9 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
54.7 99.8 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
53.4 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
49.6 99.8 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
49.3 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.1 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 0 2690 At1g04600 839480 XIA (MYOSIN XI A) member of Myosin-like proteins C.G. S.X.
0.18 6e-69 264 At1g04160 839246 XIB (MYOSIN XI B) Encodes a member of the type XI myosin protein family involved in root hair elongation. C.G. S.X.
0.16 1e-66 256 At5g43900 834412 MYA2 (ARABIDOPSIS MYOSIN 2) Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner. C.G. S.X.
0.16 2e-56 222 At2g20290 816548 XIG member of Myosin-like proteins C.G. S.X.
0.17 2e-47 192 At4g28710 828991 XIH member of Myosin-like proteins C.G. S.X.
0.08 4e-39 165 At1g54560 841898 XIE member of Myosin-like proteins C.G. S.X.
0.11 2e-38 163 At1g08730 837394 XIC Class XI myosin gene C.G. S.X.
0.13 4e-27 125 At1g17580 838333 MYA1 (MYOSIN 1) Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development. C.G. S.X.
0.10 9e-25 117 At5g20490 832171 XIK Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-20 103 Glycine max GmaAffx.6253.4.S1_at BI893603 - - 4e-8 At5g20490 XIK C.G. S.X.
0.02 9e-5 50 Hordeum vulgare Contig20373_at Contig20373 - - 2e-9 At4g28710 XIH C.G. S.X.
0.14 4e-41 173 Oryza sativa OsAffx.12341.1.S1_at - - - 0 C.G. S.X.
0.27 4e-89 331 Populus trichocarpa PtpAffx.208230.1.S1_at pmrna16377 hypothetical protein - 3e-95 At1g04600 XIA (MYOSIN XI A) C.G. S.X.
0.01 7e-1 38 Triticum aestivum TaAffx.79530.1.S1_at CA713414 - - 6e-5 At1g42680 myosin-related C.G. S.X.
0.06 1e-52 208 Vitis vinifera 1619609_at CB976068 hypothetical protein LOC100256590 - 6e-62 At5g43900 MYA2 (ARABIDOPSIS MYOSIN 2) C.G. S.X.
0.18 8e-79 295 Zea mays Zm.450.1.S1_at CN845202 myosin XI - 1e-78 At2g33240 XID C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0030048 Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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