CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g33160

Gene name glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At2g33160 817877 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA S.X. H.G.
0.38 46.7 At5g26620 832728 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At2g13900 815874 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO S.X. H.G.
0.26 24.4 At1g54880 841927 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.23 19.3 At5g18160 831934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
384.2 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
325.9 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
323.6 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
299.4 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
299.0 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
275.1 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
274.4 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
274.0 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
272.0 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
271.4 100.0 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 2e-14 81 At2g15460 816038 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.06 2e-14 81 At2g15470 816039 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.06 7e-11 69 At2g15450 816037 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.07 1e-9 65 At2g40310 818623 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.08 1e-9 65 At1g43080 840907 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV C.G. S.X.
0.12 3e-7 57 At4g13760 827010 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.08 3e-7 57 At1g43090 840908 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV C.G. S.X.
0.08 2e-5 52 At1g78400 844176 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.08 7e-5 50 At1g43100 840909 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Glycine max GmaAffx.79632.1.S1_at BI317761 - - 2e-1 At1g45688 unknown protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare rbags12h11_at rbags12h11 - - 1e+0 At3g23030 IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2) C.G. S.X.
0.02 5e-1 38 Oryza sativa OsAffx.14218.1.S1_at - - - 0 C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.210607.1.S1_at pmrna20806 hypothetical protein - 3e-19 At5g50210 QS (QUINOLINATE SYNTHASE) C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.4414.1.S1_at CA742587 - - 2e-1 At2g20875 EPF1 (EPIDERMAL PATTERNING FACTOR 1) C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1611792_at CF609858 hypothetical protein LOC100262185 - 2e-2 At3g47510 unknown protein C.G. S.X.
0.02 2e+0 34 Zea mays Zm.10640.1.S1_at AY107547.1 - - 2e-5 At1g15120 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00412 Glycoside Hydrolase
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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