CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At2g33040

Gene name ATP synthase gamma chain, mitochondrial (ATPC)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.82 90.9 At2g33040 817866 ATP synthase gamma chain, mitochondrial (ATPC) F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA S.X. H.G.
0.83 91.4 At5g67590 836895 FRO1 (FROSTBITE1) Mutant leaves have a reduced capacity for cold acclimation, appear water-soaked, leak electrolytes, and accumulate reactive oxygen species constitutively. Encode a protein with high similarity to the 18-kD Fe-S subunit of complex I (NADH dehydrogenase, EC 1.6.5.3) in the mitochondrial electron transfer chain. S.X. H.G.
0.67 81.6 At1g16700 838239 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative F:NADH dehydrogenase (ubiquinone) activity, metal ion binding;P:unknown;C:mitochondrion, respiratory chain complex I;BOAPMF S.X. H.G.
0.67 81.6 At4g29480 829069 mitochondrial ATP synthase g subunit family protein F:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrion;PO S.X. H.G.
0.67 81.6 At5g47570 834807 unknown protein F:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;PO S.X. H.G.
0.58 73.8 At5g52840 835361 NADH-ubiquinone oxidoreductase-related F:oxidoreductase activity, acting on NADH or NADPH;P:photorespiration;C:mitochondrion, mitochondrial membrane, chloroplast, respiratory chain complex I, membrane;MFPO S.X. H.G.
0.55 70.6 At4g34700 829622 complex 1 family protein / LVR family protein F:catalytic activity;P:photorespiration;C:mitochondrial membrane, plasma membrane, respiratory chain complex I;MFPO S.X. H.G.
0.40 50.8 At4g32470 829382 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane;MPFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.6 99.0 GSM252680 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
7.9 98.9 GSM252677 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
7.8 98.9 GSM252669 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (4dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
7.0 98.7 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
6.7 98.7 GSM252672 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
6.1 98.5 E-MEXP-509-raw-cel-829148703
5.6 98.4 GSM252682 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep4 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
5.6 98.4 GSM252678 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep4 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
5.6 98.4 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
5.3 98.3 GSM252681 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF C.G. S.X.
0.01 1e-1 38 At5g65700 836699 BAM1 (BARELY ANY MERISTEM 1) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. C.G. S.X.
0.02 5e-1 36 At1g19990 838588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 2e+0 34 At5g65950 836725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.01 2e+0 34 At5g19540 832074 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB C.G. S.X.
0.01 2e+0 34 At4g14240 827065 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPA C.G. S.X.
0.02 2e+0 34 At2g26050 817146 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;PM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 7e-41 169 Glycine max Gma.17344.1.S1_at CD409198 - - 7e-41 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) C.G. S.X.
0.32 5e-33 141 Hordeum vulgare Contig2722_at Contig2722 - - 2e-32 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) C.G. S.X.
0.31 1e-52 208 Oryza sativa Os.10703.2.S1_x_at - - - 0 C.G. S.X.
0.40 3e-52 206 Populus trichocarpa PtpAffx.249.66.A1_s_at CV227553 hypothetical protein - 2e-52 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) C.G. S.X.
0.26 2e-28 127 Triticum aestivum Ta.14480.2.S1_at BU099921 - - 3e-28 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) C.G. S.X.
0.47 8e-28 123 Vitis vinifera 1611755_at CB918301 hypothetical protein LOC100246670 - 4e-27 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) C.G. S.X.
0.27 3e-31 135 Zea mays Zm.5289.2.A1_a_at AI600945 hypothetical protein LOC100274172 - 1e-30 At2g33040 ATP synthase gamma chain, mitochondrial (ATPC) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
C GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
01100 Metabolic pathways
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